Flavobacterium flavipigmentatum: LNP22_09625
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Entry
LNP22_09625 CDS
T10330
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ffv Flavobacterium flavipigmentatum
Pathway
ffv03020
RNA polymerase
Brite
Enzymes [BR:
ffv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LNP22_09625 (rpoC)
Transcription machinery [BR:
ffv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LNP22_09625 (rpoC)
DNA repair and recombination proteins [BR:
ffv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LNP22_09625 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UFH36997
LinkDB
All DBs
Position
2187427..2191737
Genome browser
AA seq
1436 aa
AA seq
DB search
MMNNRNNNKDKNPVKRFNKISIGLASPESILKESRGEVLKPETINYRTHKPERDGLFCER
IFGPVKDFECACGKYKRIRYKGIICDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSL
PNKIGYILGLPSKKLDMIIYYERYVVIQAGIAKNADGESLQRLDFLTEEEYLNILDTLPQ
ENQYLDDFDPNKFVAKMGAECIMDLLARIDLDELSYQLRHSANNETSKQRKTEALKRLQV
VESFRESNLNRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRL
KRLMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFR
QNLLGKRVDYSARSVIVVGPELKLFECGLPKDMASELYKPFVIRKLIERGIVKTVKSAKK
IIDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNA
DFDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERIS
TPEHVILGQDLTFYSAEEVNIALNEGKLELNARVKIRAKDFNEAGELVYKIIQTTAGRVL
FNEVVPEAAGYINDVLTKKNLRDIIGHILSVTNVPTTAAFLDNMKDMGYKFAFRGGLSFS
LGDIRIPEQKTKLIADAREQVDGISVNYNMGLITNNERYNQVIDVWTSANAQLTELAMKN
IREDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKE
GLSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNIEDCGTLRGVEVSAL
KKNEEIVESLGERILGRVALQDVINPLTNEVLVQSGHQITEAIMRVIEASPIEKVEVRSP
LTCEALKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGIS
EESSIVTRFNGRLEIEDLKTVKGEDSEGNAVDIVVSRSTELKLVDEKTGIVLNTHNIPYG
SSIFVKDGEVVTKGSVICKWDPYNGVIVSEFTGKIAYEDLEQGQSFMVEIDEQTGFQEKV
ISEARNKKLIPTLLVYGKEGELIRSYNLPVGAHLMVENGEKIKAGKVLVKIPRRSSKAGD
ITGGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIVIESKFGEIKKYLVKLSS
QILVQENDFVRAGVPLSDGAITPDDILRIQGPAAVQQYLVNEIQEVYRLQGVKINDKHFE
VVIRQMMRKVRVQDPGDTLFLEDQLIHTKDFIVQNDKLYGMKVVEDAGDSAVLKPGQIIT
PRDLRDENSLLKRNDKNLVVARDVITATATPVLQGITRASLQTKSFISAASFQETTKVLN
EAAVAGKVDDLEGLKENVIVGHRIPAGTGMREYDNTIVGSKDDYNEMMANKEEYIY
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataatagaaataataataaggataaaaatccggtaaaaagatttaacaaaatc
tctattggattagcttcgcctgagtctattttaaaagaatcaagaggagaggttttaaaa
ccagaaacaatcaactacagaacgcacaaacctgagcgtgatggccttttctgcgaaaga
atcttcggacctgttaaagattttgagtgtgcttgtggtaaatataaaagaattcgttac
aaaggtatcatctgtgaccgttgtggtgttgaagttacagagaaaaaagtacgtcgtgat
agagtaggacacatcaatctggttgtgccaattgctcatatctggtatttccgttctctt
ccaaacaaaattggttatatccttggtcttccgtctaagaaattagatatgattatttac
tacgaaagatatgtagtaattcaggctggtattgctaaaaatgcagatggagaatcatta
caaagactagatttcttaactgaagaagaatatttgaatattttagatactcttccacag
gaaaaccaatatttagatgattttgatcctaataaatttgttgccaaaatgggagcagag
tgtattatggatttattggcgcgtattgacttagatgagttatcttaccaactaagacac
agtgctaacaatgaaacctctaaacaacgtaaaactgaggctttaaaaagattacaagtt
gtagagtctttccgtgagtctaatttaaatcgcgaaaatcgtcctgaatggatgattatg
aaagtggttcctgttattccaccagaattacgtccgcttgtaccgcttgatggaggtcgt
tttgcaacttcagatttaaatgacttataccgtcgtgtgatcatccgtaataaccgtttg
aaaagattaatggagattaaagctcctgaagtaatcttgagaaacgaaaaacgtatgttg
caggaatctgtagattcattgtttgataacacacgtaaagcttctgctgttaaaacagaa
tctaacagaccattaaaatcattatctgattccttaaaaggtaagcaaggacgtttccgt
caaaacttacttggaaaacgtgtggattattctgctcgttcggtaattgttgttggtcct
gaattgaaattattcgaatgcggattgccaaaagatatggcatctgaattatacaaacct
ttcgttatccgtaaattgattgaaagaggtattgtaaaaacagtaaaatctgctaagaaa
atcatagacaaaaaagagcctgtagtttgggatatccttgaaaacgtaattaaaggacac
ccagtattacttaaccgtgctcctacgttacacagattgggtattcaagctttccagcca
aaattaattgaaggaaaagcgatccaattgcacccattagtatgtacggctttcaacgcc
gattttgatggggatcagatggcagttcacttgccgttaggaccagaggctattttagag
gcacaattattaatgttggcttctcacaatatcttgaacccggcaaacggtgctccaatt
acagtaccttctcaggatatggttttgggtctatattatatgaccaaagaacgtatctcg
acaccagaacatgtaattttaggtcaagacttaactttctattctgctgaagaagtaaat
attgcattaaacgaaggaaaattagaattgaatgctcgtgtaaaaattagagcaaaagat
tttaatgaagctggagaattggtgtataaaattatccaaacaactgcaggacgtgtatta
tttaacgaagtagtacctgaagcagctggatatatcaatgatgtattgactaagaaaaac
cttagagatattattggacacattttaagtgtgactaacgtacctactactgctgctttc
ttggataatatgaaagatatgggttataaatttgcctttagaggaggtttatcattctct
cttggtgatattagaattccagaacaaaaaactaaattaattgcagatgccagagagcaa
gttgacggtatttctgtaaattataacatgggtcttattaccaataacgagcgttacaac
caagttattgatgtttggacttctgcaaatgctcagttgacagaattagcaatgaaaaat
attagagaagaccaacaaggtttcaactcagtatatatgatgcttgactctggggcgagg
ggttctaaagaacaaattcgtcagttaaccggtatgcgtggtttgatggctaagcctaaa
aaatctactgctggtggtggagaaattattgaaaatccgattctttctaactttaaggaa
ggtctttcgattcttgagtatttcatttctactcacggtgctcgtaaaggacttgcggat
acggctcttaaaactgccgatgctgggtacttaacaagaagacttcatgacgtttcacaa
gatgttattgtaaacatcgaagattgtggaactttaagaggtgttgaagtttctgctttg
aagaaaaatgaggaaattgttgaatctttaggagaaagaattttaggacgtgttgcattg
caagatgttataaatcctcttacgaatgaagtattagttcagtctggtcaccaaattact
gaagcaataatgagagttatcgaagcttcacctattgaaaaagtagaagtaagatcgcca
ttaacttgtgaggctttaaaaggtatttgtgctaaatgttatggtagaaatttagctacc
ggaaaaatgacacaaagaggtgaagcagtaggagttattgcagctcagtctattggagag
ccaggtacacagttaacacttcgtacgttccacgttggaggggttgctggaggtatctct
gaagaatctagtattgttacaagatttaacggtagacttgagattgaagatttaaaaacc
gttaagggtgaagacagcgaaggtaatgcggtagatatcgtagtatcgcgttcaactgaa
ttaaaattggttgacgagaaaactggaatcgtcttaaatacacacaatattccttacgga
tctagtatctttgttaaggatggtgaggtagttactaaaggatctgtgatctgtaaatgg
gatccatataatggtgtaattgtttctgagtttactggtaagattgcttacgaggattta
gaacaaggacaatcattcatggtcgaaattgatgagcaaacaggtttccaggaaaaagta
atttctgaagctagaaacaaaaaattaattccaactttattggtttatggtaaagaaggc
gaattgattcgttcgtataacttaccggtaggggcacaccttatggttgagaatggtgag
aaaattaaagcaggtaaagtattagtaaaaatcccacgtcgttcttctaaagcaggagat
attacaggaggtttaccaagaattaccgagttgcttgaggctcgtaacccttcaaaccca
gctgttgtttctgaaattgacggtgttgtatcttttggaaaaatcaaaagaggtaaccgt
gaaattgttatcgaatctaaatttggtgagattaaaaagtatttagttaaactttcaagc
caaattctagtacaagaaaatgacttcgtaagagcgggagtaccattgtctgacggtgca
attacaccagatgatattttaagaattcaaggtccggctgctgttcaacagtatttggta
aatgaaattcaagaggtataccgtttgcaaggggtaaaaatcaatgacaagcactttgag
gtagttattcgtcaaatgatgcgtaaggttagagttcaagatccaggagatacattattc
ttagaagatcaattaattcatactaaagactttatcgttcaaaacgataaattatatggt
atgaaagtagttgaagatgctggagattctgctgtattaaaaccaggtcagattattaca
cctcgtgacttacgtgatgaaaattcattactaaaacgtaacgataaaaatcttgtagta
gcaagagatgtaattactgcaacggcaacgccagttttacaaggtatcacaagagcttcg
ctacaaactaaatcatttatttctgctgcttctttccaagaaacaacaaaagtacttaac
gaggctgcagtagctggaaaagttgatgatctagaaggattgaaggaaaatgtaattgtt
ggacatagaattcctgcgggaactggtatgagagaatacgataatactattgtaggatct
aaagacgattacaacgaaatgatggctaataaagaagaatatatctattaa
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