Flavobacterium flavipigmentatum: LNP22_11220
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Entry
LNP22_11220 CDS
T10330
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ffv Flavobacterium flavipigmentatum
Pathway
ffv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP22_11220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffv03019
]
LNP22_11220
03009 Ribosome biogenesis [BR:
ffv03009
]
LNP22_11220
Enzymes [BR:
ffv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LNP22_11220
Messenger RNA biogenesis [BR:
ffv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LNP22_11220
Ribosome biogenesis [BR:
ffv03009
]
Prokaryotic type
rRNA helicases
LNP22_11220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UFH37305
LinkDB
All DBs
Position
complement(2578516..2580396)
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AA seq
626 aa
AA seq
DB search
MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP
LIQKIDANNKNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIK
RGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKST
WLFSATMPAEVARIAKQFMSDPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERI
IKQKFEEKTIPSGIEICEIQLLHLATKIKDTEVDHEIDNYLPAINNVLEDLSKEELIKKM
VSVEFNRFIAYYKKNRDISSQASGERRERGDSEPRESNNGGAVRYFVNIGSRDNFDWMSL
KDYLKETLDLGRDDVFKVDVKEGFSFFNTDPEHTDKVMEVLNNVQLEGRRINVEISKNDG
GGRRDHNGRSGGGRPSGGPRREGSFAPRREGSGGGFRSDRNSAPREGGFRSDRNSSAPRR
EGGSDRAPRRSDSFGDAPRPRRPRRD
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgaatcgttactgaaggcgattttagatcta
ggatttgagaatccgtcagaagtacaggagaaagcgattcccctattattggaaaaagac
acagatatggttgcgttggctcagacagggacagggaaaacggcagctttcggttttccg
ctaattcaaaaaattgatgccaacaacaagaatacacaagcattagttttatcgccaaca
cgagaactttgtttacagattaccaacgaacttaaaaactactcaaaatacgagaaaggt
attaatgtagtagcagtttacggcggggctagtattacagagcaagctagggacattaag
agaggtgcacaaattattgtggcaactccgggaagaatgcaagacatgatcaatagaggt
ttagtaaacattaaaaatatagattactgtattttggatgaggctgatgagatgttgaac
atgggattctatgaagacattgtatctattttatccgatactccagatcaaaaaagtaca
tggttgttctctgcaactatgccagcagaggttgcaagaattgcaaaacaatttatgagt
gaccctgtagaaattactgtaggagctaaaaactctggttctgcgaccgtttctcacgag
ttttatttggtaaatgcacgtgatcgttacgaagctttaaaacgtttagccgatgcaaat
ccggatattttttctgtggttttctgtcgtactaaaagagacacacaagctgtagctgaa
aaattaattgaagatggatacagcgctgctgcattgcatggagatttatctcaggcgcaa
cgtgatggtgtaatgaaatctttccgtggaagacaaattcagatgcttgttgctactgac
gtagctgcacgtggtattgatgttgataatattactcacgtagtaaattaccaacttcct
gacgaaatcgaaacgtacaatcaccgttctggacgtactggtagagccgggaaattagga
acttctattgtaattgttacaaaaagtgagttgcgtaaaatttcttctatcgaaagaatc
atcaaacaaaagtttgaagaaaaaacgattccgtctggtatcgaaatttgtgaaattcag
ttattacacttagcaactaaaatcaaagatacagaagtagatcacgaaattgataactac
cttccggcaatcaacaatgttcttgaagatttatctaaagaagaattgattaagaaaatg
gtatctgtagaatttaaccgctttattgcttattacaagaaaaacagagatatttcttct
caggcttctggtgaaagacgtgaaagaggtgattctgagccaagagaatcaaacaatggc
ggagcagttcgttattttgtaaatattggttcaagagacaacttcgactggatgtcgctt
aaagattatttgaaagaaacattagatttaggtcgtgatgatgttttcaaggtagatgta
aaagaaggtttctctttctttaacactgatcctgagcacacagataaagtgatggaagta
ttgaacaacgtacaacttgaaggacgtcgtattaatgtagaaatctctaaaaatgatggt
ggcggaagacgtgaccataacggacgtagcggcggaggtcgtccttctggcggtccaaga
cgtgaaggaagctttgctccaagacgtgaaggttctggcggtggatttagaagcgataga
aattctgctcctagagaaggtggttttagaagcgacagaaactcatctgctccaagaaga
gaaggtggttctgacagagcgccacgtcgttcagacagctttggtgatgcaccaagacca
agaagaccaagaagagattaa
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