Flavobacterium flavipigmentatum: LNP22_12085
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Entry
LNP22_12085 CDS
T10330
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ffv Flavobacterium flavipigmentatum
Pathway
ffv00040
Pentose and glucuronate interconversions
ffv01100
Metabolic pathways
ffv02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ffv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
LNP22_12085
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LNP22_12085
Enzymes [BR:
ffv01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
LNP22_12085
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pectate_lyase_5
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
UFH37474
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Position
complement(2777441..2778550)
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AA seq
369 aa
AA seq
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MNFKSKCSALLMALMIGLTGCNTEEMASTANAEATVETTVPTTTDFTAKVGNCAQVPGWA
SQNGGTLGGGTSAETTVTTYAQLKSAIESSSVKVIKVTGTITVTTRLSLQDQTGKTIYGT
SGAKLVSTNQTKDGSGIINIKRCKNLIIRNLIFEGPGAYDTDGWDNAILDDCQNVWVDHC
EFRDGVDGNFDIKNKSDYITVSYCKFGYLKPPKAGGSGGSDDHRYSNLIGSSDGATADRG
KLRITFARCWWAPGCKERMPRVRFGKVHLINNYFNSTVSNKCIAAGFEADIKVENNVFEG
VKTPIDLMTGFTAVTAVGNVFTNTSGNTAGSKTAFTPPYTIVTLAASAVKADVTGGAGAT
FSGNTCGSF
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaatcaaaatgttcagcgcttttaatggcactgatgatcggtcttacggga
tgtaataccgaagaaatggcttcgacagcaaatgctgaagcaactgtagaaacaacagta
cctacaacaactgactttacagcaaaagtgggtaattgtgctcaagttccgggatgggcc
tctcaaaacggaggaacacttggtggaggaacgtccgccgaaacaacggttactacttac
gctcaattaaaatctgccatagaaagcagttctgtaaaagtgatcaaagttacgggtact
attaccgtaacaacaagactgtcgctccaagaccaaaccggtaaaactatttatggtaca
agcggagcaaaattggtttctaccaaccagacaaaagatggctcaggtatcatcaacatc
aaaagatgtaaaaatctaattatcagaaatcttatttttgaaggacccggcgcttatgac
accgacggatgggacaacgctattttggacgattgccaaaatgtatgggtagaccactgc
gaatttagagatggtgtagatggcaactttgacatcaaaaacaaatcagattatattacg
gtttcttattgcaaatttggttatttaaaaccaccaaaagctggaggttcaggaggttcg
gatgatcacagatattcaaacttaataggttcaagcgatggcgcaactgcagatcgcggg
aaactaagaattacttttgctcgttgctggtgggctcctggctgcaaagaaagaatgcca
agagttcgttttggaaaagtacatttgatcaacaattactttaacagcaccgtaagcaat
aaatgtatcgctgcaggatttgaagctgatattaaagtagagaacaatgtttttgaaggc
gtaaaaactcctattgatttaatgactggttttacagctgttacagcagttggaaacgtg
tttactaatactagcggaaatacagcaggaagcaaaacagcttttacacctccttacact
atcgtaacgcttgcggcttcggcagtaaaagcggatgttactggtggagcgggcgctaca
ttctcaggtaatacttgcggttctttctaa
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