Flavobacterium flavipigmentatum: LNP22_13550
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Entry
LNP22_13550 CDS
T10330
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
ffv Flavobacterium flavipigmentatum
Pathway
ffv03030
DNA replication
ffv03430
Mismatch repair
ffv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ffv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LNP22_13550 (holA)
03430 Mismatch repair
LNP22_13550 (holA)
03440 Homologous recombination
LNP22_13550 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ffv03032
]
LNP22_13550 (holA)
03400 DNA repair and recombination proteins [BR:
ffv03400
]
LNP22_13550 (holA)
Enzymes [BR:
ffv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LNP22_13550 (holA)
DNA replication proteins [BR:
ffv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LNP22_13550 (holA)
DNA repair and recombination proteins [BR:
ffv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LNP22_13550 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
UPF0113
UDI
Motif
Other DBs
NCBI-ProteinID:
UFH40573
LinkDB
All DBs
Position
3153076..3154080
Genome browser
AA seq
334 aa
AA seq
DB search
MDEVVKIVNDIKAGNIKPIYFLMGEEPYYIDKLSEYIEQNVLSEEEKGFNQTVLYGRDVS
VEDIVSTAKRYPMMADRQVVIVKEAQDLSRTIDKIESYVNNPMETTVLVFCYKYKTLDKR
KKVTKLLAQSGVVYESKKLYENQVGDWIKRVLAGKKYTIDPKANAMLVEFLGTDLSKINN
ELEKLQIILPQGTVITPQHIEENIGFSKDYNVFELRKAIGERNQLKAYKIAENFAHNPKE
YPLVMTTGLVFGFFVQLLKYHGLKDKNPKNVASVIGVNPYFLKEYDLAIKNYPMRKVSQI
VGALRDVDVKSKGVGANALPQSDLLKEMLYKIFN
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagttgtaaaaattgttaatgatataaaagcgggaaacatcaaacctatttat
tttttaatgggtgaagagccttattatattgataaattatcagaatacatagagcaaaat
gtgctttctgaggaagaaaaagggtttaatcaaacggttttgtatggtcgtgatgtttca
gttgaagatatcgtttcaacggccaagcgttatccaatgatggcggatcgacaagtggtt
attgtaaaagaagcacaggatttgtccagaacgattgataaaatagaatcatacgtcaat
aatccaatggaaacaacggtacttgttttttgctacaagtacaaaacgcttgataagcgt
aaaaaagtaaccaaattattggcacaaagtggggtggtttacgaaagcaaaaaattatac
gaaaaccaagtaggcgactggataaagcgtgtactagctggtaaaaaatacacgattgat
ccaaaagcaaacgccatgttggttgagtttttgggtaccgatttaagtaaaatcaataac
gaactcgaaaaattgcaaattattttgcctcagggaactgttattacaccacaacatatt
gaggaaaacattggctttagcaaagactataatgtttttgaactccgcaaagctattggg
gaacgcaaccaactaaaagcgtataaaattgccgaaaattttgctcataatcctaaagaa
tatcctttggtaatgacaacgggattggtttttggattttttgtgcagcttttaaaatac
cacggattaaaagataaaaatcctaaaaatgtcgcttctgtgataggggtaaatccttat
tttttaaaggaatacgatttggcgatcaaaaattatccgatgcgaaaagtgagtcaaatt
gtaggtgctttacgcgatgtcgacgttaaaagtaagggagtaggcgccaatgctttgccc
caatctgatttgttaaaagaaatgctgtataaaatatttaattaa
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