Flavobacterium flavipigmentatum: LNP22_16020
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Entry
LNP22_16020 CDS
T10330
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
ffv Flavobacterium flavipigmentatum
Pathway
ffv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ffv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LNP22_16020 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ffv03400
]
LNP22_16020 (uvrA)
DNA repair and recombination proteins [BR:
ffv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LNP22_16020 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LNP22_16020 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
RsgA_GTPase
DnaJ_CXXCXGXG
nSTAND1
AAA_22
nSTAND3
Viral_helicase1
AAA_21
AAA_18
AAA_15
cobW
AAA_23
Motif
Other DBs
NCBI-ProteinID:
UFH38228
LinkDB
All DBs
Position
3764276..3767107
Genome browser
AA seq
943 aa
AA seq
DB search
MLEKDNTIEVLGARVHNLKNIDISIPREKLVVITGLSGSGKSSLAFDTIYAEGQRRYVET
FSAYARQFLGGLERPDVDKIDGLSPVIAIEQKTTSKSPRSTVGTITEIYDFLRLLYARGA
DAYSYNTGEKMVSYSDEQIKDLIIQDFSGKRINILAPVIKARKGHYAELFQQITKQGFLK
VRVNGEVQDLVSGMKLDRYKTHDIEIVVDRMLVEDSEDNQKRLSESINTAMHHGENVLMI
LDQDSNEVRYFSRNLMCPSTGISYQNPEPNLFSFNSPKGACPHCNGLGTVHEINVQKIIP
NPKLSIKSGGFAPLGEYKSSWIFKQLEVIGEKFGFKITDPIEKIPEEAMQMILHGGKDKF
TVNSKDLGITRDYKIDFEGISNFIKNQYDESASTTIKRWAKDFMDEINCPVCDGSRLKKE
AQFFRVNEKNITELCDMDISDLTAWFQDLNTHLSDKQLLIASEVVKEIKDRLNFLMNVGL
NYLALSRSSKSLSGGEAQRIRLATQIGSQLVGVLYILDEPSIGLHQRDNEKLIHSLEQLR
DIGNSVIVVEHDKDMIERADYVIDIGPKAGKYGGEIISIGTPAETLKSNTITAQYLNGTM
KLEIPKERRKGNGKFMKLTGATGNNLKNVSIELPLGQLICVTGVSGSGKSTLINETLYPI
LNAYYFNGVKKPQPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPATYTEVFTEIRNLFTMT
SESMIRGYKAGRFSFNVKGGRCETCEGSGVRTIEMNFLPDVYVECETCQGKRFNRETLEI
RYKGKSISDVLNMTVDEAVPFFENIPKIYRKVKTIQDVGLGYITLGQQSTTLSGGEAQRI
KLAGELSKKDTGNTFYILDEPTTGLHFEDIRVLMDVINKLVDKGNTILVIEHNMDVIKLA
DYIIDIGPEGGKGGGELIAKGTPEEVAKSKKSHTAKFLKKELE
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgttagaaaaagacaataccattgaagttcttggcgcaagagttcataatctaaaaaat
atcgatatttctattccgcgtgagaaactagtagtcattactggtttatcaggttctgga
aaatcatctttggcatttgacacgatttatgccgaaggacagcgtcgttatgtagaaact
ttttcggcttatgccagacaatttttgggcggtttagaacgtcccgatgttgacaaaatc
gatgggctttcgcctgtgattgctatcgaacaaaaaacgaccagtaaaagtccacgttct
actgtaggaaccatcaccgaaatatacgattttttaaggcttctgtatgcgagaggcgct
gatgcttacagttacaataccggcgaaaaaatggtatcgtattctgatgagcaaattaaa
gatctgataattcaggactttagcggaaaacgaatcaatattctggctccagttattaag
gctagaaaaggtcattatgccgaactttttcagcaaattaccaagcaaggtttcttaaaa
gttcgcgtaaatggcgaagtacaagatttggtttcaggaatgaaacttgaccgttataaa
acccatgacattgaaattgtcgtagacagaatgttggttgaagacagtgaagacaatcag
aaacgtttatctgaaagtatcaataccgccatgcatcatggagaaaatgtattgatgatt
ttggatcaggatagcaacgaagtacgttattttagtagaaatttaatgtgtccatctaca
ggaatatcctatcaaaatcctgaaccgaatttattttctttcaactcaccaaaaggagct
tgcccacattgtaacggattgggaacggttcacgaaatcaatgttcaaaaaattattcca
aatccaaaattatcgattaaaagcggtggttttgctccgcttggcgaatacaaatcgtct
tggatctttaaacaattggaagttattggagaaaaatttggttttaaaataacagacccg
attgagaaaattccagaagaagccatgcaaatgattttacatggcggaaaagataaattt
acggtaaattctaaagatttaggcattacgcgtgattataaaatagactttgaaggaatc
tctaatttcatcaaaaatcaatatgacgaaagcgcttcgacaaccataaaacgctgggca
aaagatttcatggacgagatcaactgccctgtttgtgatggttcacgtttgaaaaaagaa
gcgcagttttttagagtaaatgaaaaaaacatcaccgaattgtgtgatatggatatttct
gatttgacagcctggtttcaagatcttaacacacatttatcagacaaacagcttttgatt
gcttctgaagtggtaaaagaaatcaaagaccgactgaactttttgatgaatgttggtttg
aattatttggctttaagccgaagttcaaaatcgctttcgggtggtgaggcacagcgtatt
cgtctggccacacaaattggttcgcaattggtaggtgttttatatattttggatgaacca
agcattggtttgcaccaaagagacaatgaaaaattgattcattctttggagcaattgcgt
gacataggaaattctgttattgtggtagaacacgacaaagatatgattgagcgagccgat
tatgttatcgatattgggccaaaagccggtaaatatggtggagaaatcattagtatcgga
acgcctgcagaaactttaaaatcaaataccattaccgcacaatatttgaacggaacaatg
aaattggagattccgaaagaaagacgcaaaggcaatggaaagtttatgaaacttactggc
gcgacaggaaacaacctgaaaaatgtttcgatcgaattgcctctaggacaattaatttgt
gttacgggagtttctggcagcggaaaatcgactttgataaacgagaccctctaccctatt
ttgaacgcgtattattttaatggtgtcaaaaaaccgcaaccttataaaaaaattgaaggc
ctagaacatattgacaaagtaattgatattgaccagagtccgattgggagaacacctcga
tcgaatcctgccacatatacagaagtttttaccgaaattagaaacttgtttaccatgact
tcagaaagtatgattcgcggttacaaagcgggtcgttttagttttaatgtaaaaggcgga
cgctgcgaaacctgtgaaggttcgggagttagaaccattgaaatgaactttcttcccgat
gtttatgtagaatgcgaaacctgtcagggaaaacgttttaacagagaaactttagaaatt
cgatacaaaggaaaatctatttcggatgttttgaatatgacggtggatgaggcggttccg
ttttttgaaaatattccgaaaatttatcgaaaagtaaaaacgattcaggatgttggttta
ggctatattacacttgggcagcaaagtacaacgctttctggcggtgaggcacaacgcatc
aaattggcaggagaattgtctaaaaaagacactggaaatacgttttatattttggatgaa
cccactacgggattgcattttgaagacattcgtgttttgatggatgtaattaataaactg
gtagacaaaggcaataccatcttggtaattgaacataatatggatgttataaaacttgct
gattatattatcgatattggtcctgaaggtggaaaaggcggcggagaattgatcgccaaa
ggaactcctgaagaagtggcaaaaagcaagaagagccacacggctaaatttttgaaaaaa
gaattggaataa
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