Flavobacterium flavipigmentatum: LNP22_16335
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Entry
LNP22_16335 CDS
T10330
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ffv Flavobacterium flavipigmentatum
Pathway
ffv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP22_16335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffv03019
]
LNP22_16335
Enzymes [BR:
ffv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LNP22_16335
Messenger RNA biogenesis [BR:
ffv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LNP22_16335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UFH38287
LinkDB
All DBs
Position
3840076..3841326
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AA seq
416 aa
AA seq
DB search
MLFEDLSLSKSIQKAVFEEGYLNPTPIQEQSIPIVLAGRDLIGCAQTGTGKTAAFAIPII
HQLHRIVGSSKKAKVIRALVVTPTRELAVQIGQSFDTYAKYTNLTQLTIFGGVSQNPQVD
TLKKGVDILVATPGRLLDLQKQGFLDLDNLHVLVLDEADQMLDMGFINDVKKIVKLTPKN
RQTLLFSATMPIAIRELAEMFLQDPAKVEVSPVSSTAENVEQRVYFVEKTEKRNLLYHLI
KNEDLSNVLVFSRTKHGADNVVKALRKKDIPAEAIHGDKSQNARQRVLDAFKNKEVGVLV
ATDIAARGIDIDQLPFVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCSKDEHPYWKDI
QKLIKVDVKTISDHPYQWHAGSPEATVEQPKNSNRSGGAHKSRKSNASKQNKKRWY
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcactttcaaaaagtatacaaaaagccgtatttgaagaaggc
tacctaaatcccactccaattcaagaacaatctatccccatcgttttggccggaagagat
ttgattggctgtgctcaaaccggtactggaaaaacagcagcttttgcaatccccatcata
catcagttacaccgcattgtaggttcatcaaaaaaagcaaaagtcattagagctttagta
gtcacccctaccagagaactagcggtacaaattgggcaaagttttgatacttacgccaaa
tataccaatcttactcagctgactatttttggaggcgtttctcaaaatcctcaggttgat
actctaaaaaaaggtgttgatattttggtcgcaacaccaggaagattactagatttacaa
aaacaaggttttcttgatttggataatttgcacgttttagtattagacgaagccgatcaa
atgctggacatgggttttataaacgatgtcaaaaaaattgtaaaattaacgccaaaaaat
cgtcagacccttttgttttcagctactatgccgattgcaattcgcgaactagccgaaatg
tttttgcaggatcctgcaaaagtagaagtttcgccagtttcgtcaacggcagaaaatgta
gagcaacgtgtctattttgttgaaaaaacagaaaaaagaaatttactttatcatttaata
aaaaatgaagatttgtcaaatgtgttggttttttcgagaaccaaacatggcgctgataat
gtggtaaaagcacttcgcaaaaaagatattccagctgaagccattcacggtgataagtca
caaaatgcaagacaacgagttttggatgctttcaagaacaaagaagtgggtgttttagtc
gctaccgatattgctgcgagaggaattgatattgaccaattgccttttgtaatcaacttt
gatttgcctaacattccggaaacttacgtacaccgaattggtagaacaggacgtgcagga
aatggcggaattgctatttcgttttgtagcaaagacgagcatccgtactggaaagacatt
cagaaactgattaaagtagatgtaaaaaccatcagcgatcatccttaccaatggcatgcc
ggaagtccggaagccacggttgaacagcctaaaaactctaaccgaagcggtggtgcacac
aagtcaagaaaatcaaatgcttctaaacaaaacaaaaaacgttggtattaa
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