Fulmarus glacialis (Northern fulmar): 104072649
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Entry
104072649 CDS
T08370
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
fga
Fulmarus glacialis (Northern fulmar)
Pathway
fga03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fga00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104072649 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fga03021
]
104072649 (PCF11)
03019 Messenger RNA biogenesis [BR:
fga03019
]
104072649 (PCF11)
Transcription machinery [BR:
fga03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104072649 (PCF11)
Messenger RNA biogenesis [BR:
fga03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104072649 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
CID
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
104072649
NCBI-ProteinID:
XP_009570465
LinkDB
All DBs
Position
Unknown
AA seq
1637 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVTSGASTPPAVPEI
QKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGSSTIASVPAPS
KQHMSPTPHMTVKPPHQTVVQSEKNKPSPSPPLHDIKIVNRDPRLNRMAQHSSHAKDQSH
RKEFPPNTTSQSDTKANKTTQAEKQNSTKQEKLKASEKTQKKELDQSEAKSKSPSPLKNK
LPNTKDTKTQECESTKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRRSTEKKEKEEHKTC
EHRPVGSRNKVINGAVQKQDTTTEESEKQGGKQGRSSSRKRSRSRSPKARSPSTHSPKRR
ERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSNKRNVKQEVRDPR
RVKKAQEDRPQETASQHSTKASPDPKENAENWQGSKSGKRWKSGWEENKNSQQNEEHQAL
GKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKANERLTS
GEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLSDAELTYYEHKAK
LKRTQVQHSLSRLDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQFDRKEPFGERSRRH
SPVSGTNRPFADNLSPLETRRRLEEQNATKGARGSKNFDPYDSWGESDEFRDALRQQGKS
TTEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRTRYEDPEKAPFPESPGS
RFGGIEAKQRISALMEDRPLFDGSPRQAAARVGVDGQGSPFVDGPAAGSSSRIDGPPGQA
AMRFEGPLVGAGASQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPPGQVGGGGPLRFE
GPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFEGPHGQPMGPRGQ
PGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHGQPMGPHGP
SGGGLRFEGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFDGPLGRAGPRFDG
CHAAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQRFDGPHQPASRF
DLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPSHGMQFQRPDLFDGSP
GPNFNGPAGPGAQNFPLRAAGHYFDEKSLQGPQYGNFNNMPMGSNQVSLMSAQPGPYGQG
QQYLPNPGSFVQNPAGALPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQVNET
SAQPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTD
VYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEV
VLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHP
SCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETQESCDSPKVKEEPDDTPTACAE
ESTPASTDIKTEPDETV
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttatggattccattgtcaagaatgtgggaagagaatatcttactgcatttact
aaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgctccacatgggatgatatttttcctttgaagaaactatatgca
cttgatgtcagagtcaactcattagatcctgcttggccaattaaacctctgcccccaaat
gtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgccagaggaatcc
actgcacctacctctgctgtcacttctggtgcctctactcctccagctgttcctgaaata
caaaagaatttgacacaggagcaactgataaggcagcaattgcttgcaaagcaaaagcaa
ttgttagaacttcagcaaaaaaaattagagctggagctggaacagactaaagcacagttg
gctgtatctcttagtgttcagcaagggtcatctactatagcttcagttccagcaccttcc
aagcaacacatgtctcccacacctcatatgacagttaaaccacctcatcagacagttgtg
caatctgaaaaaaataaaccatccccaagtcctccacttcatgatatcaaaatagtaaat
agggatcctcgacttaataggatggctcaacattcttctcatgctaaagatcaatctcat
aggaaagaatttccaccaaacacgaccagtcagtctgataccaaggcaaacaaaacaaca
caggctgaaaaacaaaactcaacaaagcaagaaaaattgaaagcaagtgaaaaaacacag
aagaaagaacttgaccagtcagaagcaaaatctaaatcaccatcccctttaaaaaataag
ctacccaatactaaagatactaaaacccaggaatgtgaaagcacaaaagtgtctgaaatt
agtaagcgggatccaagactgaaaagacatcttcaagataagtcagagggcaaagaggag
gaggtgaaagaaaagaggagaagtacagagaagaaagaaaaagaggaacacaagacatgt
gagcatagaccagtaggcagcagaaataaagtaattaatggtgctgttcagaaacaagac
acaactacagaggagtcagaaaaacagggtggaaaacaagggagatcaagtagtagaaaa
cggtcacgatcacgctctcctaaggcacggtcgccatctacacattctccaaaaaggcga
gagaggagatcacccaaaagaagacttaggagtttatctcctacttcatcaactcctaaa
attggaaagatacgtcagataggccctaagcagtctcatgttgaagaaggcacacaagca
gcaagagacgaaagaaattctaataagagaaatgttaaacaagaggtgcgagatccgagg
agagtgaaaaaagcccaagaagacaggccccaagaaacagcaagccagcattctaccaaa
gcttctcctgatccaaaggagaatgcagaaaactggcaaggatccaaatcaggcaagagg
tggaaatctggttgggaagaaaataagaactcacagcagaatgaagaacaccaagcactt
ggtaaatcccctcaccaaagacaccgggaaaactggcctgctggtaaaggaattttatca
ccccgagcaccaaagcagcagcaccggttaagtgtggatgctaatttacaaattcccaaa
gaattgacatctgcaagcaagagagaattacttaagaaggctaatgaacgcttaacatct
ggtgaaataacacaagatgagttcctcatggtagctcatcagatccgacagctgttccag
tatcaggaaggaaagcacagatgtaatgtctgggatagccctacagaggaaaaatgtggt
ttgaaaaagaaacctcttctatcggacgcagaattaacatactatgaacataaggctaaa
ctaaaaagaacacaagttcagcattcgttgtcaaggcttgatctgttggatcctgatgat
attttggattatcatttgcctgatgcgttgctttctggaatagaatgtgagcaagcaaaa
gccaagcgtggagtacagtttgacaggaaagaaccatttggagaaagatcaaggagacat
tctcctgtaagtggcactaatagaccttttgccgataacctctcaccacttgagactcga
cgaaggcttgaggaacaaaatgctactaaaggagcaagaggttctaagaactttgatcct
tatgacagctggggagaatcagatgaatttagagatgctctcagacaacaggggaaaagc
acaacagagttccagaaaatagacggtgatgcaatctgcagatttgataatcgtgaagaa
agacagcttcttgggcaagctggtgttcgagaggaaccaagatcaccattcagtgaacgt
ttcaaaagaactagatatgaagatccagagaaagcaccgtttccagaaagtccaggatca
agatttggaggcattgaagcaaagcagaggataagtgcactaatggaagacagacctcta
tttgatggctcacctagacaggctgctgcaagagttggggtagatggacaaggaagtcct
tttgttgatggtcctgctgctggttcaagttccagaattgatgggccacctggacaggct
gctatgagatttgaggggcctttggtgggggcaggtgcatctcagtttgatggaccattg
gcaggagcagggggagctggggccctaagatttgatgggccaccagggcagctggcgggg
gccctgaggtttgaaggacccccaggacaggttggtggaggaggtccactgaggtttgag
ggacctcttgggcagataggtgggcctttgcggttcgaggggcctgcagggcagcctgta
ggtggtcctagatttgaaggacctggagttggtctcaggtttgagggtccacgtggtcag
ccttcaggtggtctcaggtttgagggacctcatggtcaacctatggggcctcgaggtcaa
ccagggggtggtctcaggtttgagggaccccatggtcagcccttggggcctcatggtcaa
ccagggggtggcctcaggtttgaggggccacatttacagccattggggccccatggtcaa
cctggaggtggcctcagatttgaggggccacatggtcagcctatggggccacatggacca
tcaggtggtgggctcagatttgaggggccacatggaccatcaggtggtgggctcagattg
gaaggaccacatggtcagccaggtgtaggtcctaggttgattgatggaccggtacatcag
ggagctggtggactcagatttgatggtcctctgggtcgggctggtccaagatttgatggt
tgtcatgcagctggatttgatggtcagcctggacaactgtctctcttgcaacgatttgat
ggaattcatggacagcctggtccaagatttgaaagggcgcctggccaacaggcacaacca
cgatttgatacagccatacctcaaagatttgatggacctcaccagccagcctctagattt
gacttgccccttggccttcaaggtgcacgtttcgaaaatgtagctaaccatcctgcctca
agactagaaatgtcaccatacggacaaggtggcccgtttgtcgaacatcccggccagggc
tacaatggaccatctcatgggatgcagttccagcggcctgatttatttgatggttcacct
ggaccaaatttcaatgggccagctggcccaggagcacagaatttcccattgagagcagct
ggacattactttgatgaaaaaagtcttcagggtcctcaatatgggaacttcaataatatg
ccaatgggaagtaatcaggtttctctcatgtctgctcaaccagggccttatggccaaggt
caacagtatttgccaaatcctggaagttttgttcagaaccctgcaggagcccttccacat
tcatatcctgataaccaccttggacagcttgatgtcaacgaattgtttgctaaactgctg
tcaacagggatactcaaactgtcaaaaactgattccacttcagcacaagtgaatgaaaca
tcagcccagccagctgctgaagaggaagatgatgaccagaatgaagatcaaaatgttcca
gacctcactaacttcacagttgaagaacttagacagcgttatgatagtgttataaatcga
ctgtacactggaattcagtgttactcatgtggaatgagattcactacttcacagacagat
gtttatgcggatcatttagattggcattatcgtcagaaccggacagaaaaagatgttagc
agaaaaattacacacagaagatggtactacagtttaacagactggattgaatttgaagaa
atagccgatctagaggagcgtgcaaaaagccagttttttgaaaaagctcacgaagaggtt
gtgttaaagacacaagaagctgcgaaagagaaggagtttcagagtgtccctgctggacca
gctggagcagttgagagctgtgaaatttgccaagagcaatttgaacagtattgggatgag
gaagaggaagagtggcacctgaagaacgctatcagagtagatgaaaagatttaccatccg
tcttgctacgaagattaccaaaacacatcatcattcgattgcacaccatctcccagcaag
actcctgtagaaaatccactaaatataatgttgaacattgttaaacaagaaacacaagag
tcctgtgactcacctaaagtcaaagaagaacctgatgacacccctactgcctgtgcagaa
gagagcacacctgcatctacagatattaaaacagaacctgatgagactgtttaa
DBGET
integrated database retrieval system
