KEGG   Fulmarus glacialis (Northern fulmar): 104075305
Entry
104075305         CDS       T08370                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
fga  Fulmarus glacialis (Northern fulmar)
Pathway
fga03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fga00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104075305 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fga03041]
    104075305 (SNRNP40)
Spliceosome [BR:fga03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104075305 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    104075305 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Cytochrom_D1 WDR54 WD40_like WD_LRWD1 Beta-prop_Nup120_160 PROPPIN
Other DBs
NCBI-GeneID: 104075305
NCBI-ProteinID: XP_009574048
LinkDB
Position
Unknown
AA seq 320 aa
LTRLPCCLPQGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGNTLASAGFDRLILLWNVYG
DCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSC
YPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDI
KVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKIF
QGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAGSVNELAFHP
EEPIILSASSDKRLYMGEIQ
NT seq 963 nt   +upstreamnt  +downstreamnt
ctcacccggctcccctgttgcctcccgcagggcccaccgcgctgctcctccctgcaggcc
cccatcatgctgctctcggggcacgaaggagaggtgtactgctgcaagttccaccccaac
ggcaacacccttgcctccgccggcttcgacaggctcatcctattgtggaacgtctacggg
gactgcgacaactatgccaccctgaagggacacagcggggccgttatggagctgcactat
aacacagacggcagcatgctcttctcagcatccacagacaaaaccgtggctgtgtgggac
agtgagactggagagagagtgaagagactgaagggccatacctcattcgttaactcctgt
tacccagcgaggcgaggaccccagcttgtctgtacaggcagtgatgatgggacagtgaag
ctgtgggatatcaggaaaaaagctgctgtccagacatttcagaacacgtaccaggtcttg
gctgtaactttcaatgacaccagtgatcagatcatatccggaggcatcgacaacgatatt
aaggtgtgggaccttcgccagaacaagctcacctacacgatgagaggacacgcggactcg
gtgacaggcctcagtctgagttcggaaggctcctacctgctctccaacgcaatggacaac
acagttcgcatctgggatgtgcgaccgtttgcccctaaagagagatgtgtaaagattttc
caggggaacgtacataattttgaaaagaatcttctgaggtgctcttggtccccagatggg
agtaaaatcgcagggggatcggctgacaggtttgtctacgtgtgggacaccacatccagg
aggattttgtacaagctgccaggccatgccgggtcggtgaacgaactggctttccatccg
gaggaacccattatactctccgcatccagcgacaaaagactgtatatgggggagatccag
tga

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