Fulmarus glacialis (Northern fulmar): 104076527
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Entry
104076527 CDS
T08370
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
fga
Fulmarus glacialis (Northern fulmar)
Pathway
fga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104076527 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fga03019
]
104076527 (PARN)
Enzymes [BR:
fga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104076527 (PARN)
Messenger RNA biogenesis [BR:
fga03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104076527 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
T6PP_C
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
104076527
NCBI-ProteinID:
XP_009575722
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQGF
DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVTIPEDQKKFI
EKVVEQIEDLLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIVI
SKVNEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQFY
CPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKVE
SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFNK
LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLKT
QCTPYVSQSRYYCVNSFTGTSTVGKRSMSPIQEETGSDDMEEGEGQDPESDQTDSCAESL
PDGKKRAKKFKKIKTEQVPAGSLTTSSTGIFEVPETW
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggattttttgctctttcagtttggcctttgcacttttaaatatgatcacacagaagaa
aagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaagttca
ccagacgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaaggattt
gattttaataaagtttttcgcaacggaattccatatttaaatcaggaagaagaaagacag
ctaagggaacagtatgatgaaaaacgttcccaggccaatggtgcaggatctctgtcatac
atttctcctaatgctacaaagtgtcctgtaacaattcctgaagaccagaaaaaattcatc
gagaaagtagtggaacagatagaagacttactaaagaatgaagaaaatgaaagtttggaa
ctggagccatgtacaggatttcagaggaaattaatttatcagaccttgagctggaaatat
ccaaaaggtatccatgttgaaactctggagtcagataagaaggagagatatattgttatt
agtaaggtaaatgaagaagaacgaaaaagaagagaacagcagaaacaagcaaaagaacag
gaagaattgaatgatgcggtaggattttccagagtcgttcatgccattgctaattctggg
aagcttgttattgggcacaatatgctactagatgttatgcataccatacaccagttctat
tgtcccttacctgatgacctaagtgagttcaaggaagtaacatcatgtgtctttccccgg
ctgttggatactaaattgatggcaagtacacaaccttttaaggagattattaataataca
tcccttgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaagttgaa
agtgccgaagggtttccaagttatgatacagcttccgaacaacttcacgaagcaggatat
gatgcttacattactggactgtgcttcatctccatggctaatttcctgggttcattcctc
agtcctccgaaaaaccatgtgtctgctagatcaaaactcattgaacctttttttaacaag
ctatttcttatgagagtaatggacataccatatctcaatttggaaggaccagacttgcag
ccaaaacgagatcatgttcttcatgttacttttcccaaagagtggaaaactagtgacctt
taccagcttttcagtgcctttggtaacattcaggtttcgtggattgatgatacatcagca
tttgtatcattgagccagccagaacaagtacaaatagctgtaaacaccagcaggtatgct
gaaagttataggatccagacatatgcagaatatgttgagaaaaaacatgaagaaaaacag
gcaaagagaaaatgtacagaagatagttggaaggagatggagagaaagcggttaaaaact
caatgcacaccttacgtttcccagagtcgatactactgtgttaacagttttacaggtacc
agtacagtgggaaagagaagcatgagtcctattcaggaagaaactggttctgatgatatg
gaagagggagaaggccaagatccagaatctgatcagacagactcctgtgcagagtccctt
ccagatggtaagaagagagccaaaaagttcaaaaagatcaagacagaacaagttccagca
ggaagcctcacaactagttccactggaatttttgaagtccctgaaacatggtag
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