Fulmarus glacialis (Northern fulmar): 104082910
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Entry
104082910 CDS
T08370
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
fga
Fulmarus glacialis (Northern fulmar)
Pathway
fga03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fga00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104082910 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fga03041
]
104082910 (SNRNP200)
Enzymes [BR:
fga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104082910 (SNRNP200)
Spliceosome [BR:
fga03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104082910 (SNRNP200)
Complex C
U5 SnRNP specific factors
104082910 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Hikeshi-like_C
Terminase_6N
Motif
Other DBs
NCBI-GeneID:
104082910
NCBI-ProteinID:
XP_009584483
LinkDB
All DBs
Position
Unknown
AA seq
2134 aa
AA seq
DB search
REFRGTEKLRSTRNSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKPQ
MQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFIQA
ALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKITDY
GGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDIYGEVRDEASDDDMEGDEAVVRCTLSA
NLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDREC
ENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQ
LHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGSHF
MANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYAQAGFEGFKTLN
RIQSKLYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINIDGTINVDDFKIIYIA
PMRSLVQEMVGSFGKRLATYGINVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGE
RTYTQLVRLVILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYEDVA
TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLN
AETVLGNVQNAKDAVNWLGYTYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAAL
MLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETMQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVVKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVEL
TIAPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQ
DKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPM
EALAEQVFLDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQR
KNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVIVF
VPSRKQTRLTAINILTTCASDVQRQRFLHCAEKDLVPYLDKLNDNTLKETLVNGVGYLHE
GLTAMERRVVEQLFSSGAVQVMVASRSLCWGMNIAAHLVIIMDTQYYNGKIHAYVDYPIY
DVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVT
KTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRH
HEDNLLRQLAQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESV
FDIMEMEDEDRNALLQLSDAQIADVARFCNRYPNIELSYEVVEKESIRSGGPVVVLVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATGTH
NYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
cgggaatttcggggcaccgagaagttacggagtacccggaattccaacctcgtcctccaa
gccgatcgctcgctgatcgaccggacccggcgggatgaaccgacgggggaagtcctgtcc
ttggtgggcaaactggaggggacccgcatgggggacaaggcgcagagaaccaaaccccag
atgcaggaggagagacgagcaaagagaaggaagcgcgacgaggacaggcatgacatcaac
aagatgaagggttacaccctgctctccgagggcatcgatgagatggtgggcatcatctac
aaacccaaaaccaaggagacccgcgagacctacgaggtgttgctgagcttcattcaggcg
gctcttggggaccagccacgagacatcctctgtggagccgctgacgaggtcctggcggta
ctgaagaatgagaagctgcgcgataaggagaggaggaaggagatcgatctgctgttggga
cagacggatgatacccgctaccacgtgctggtgaacctggggaagaagatcacggactat
ggtggagacaaggaaatccagaacatggatgacaatattgatgagacgtacggggtgaac
gtgcagttcgagtccgatgaggaggaaggcgatgaggacatttacggcgaagtgcgtgac
gaagcgtccgacgatgacatggagggagatgaagccgttgtccgttgcaccctctcggcc
aaccttgtggcatcgggtgagctgatgagttcaaagaagaaggatctgcatcctcgagac
atcgatgccttttggctccagcggcagctgagccgcttctacgatgatgccattgtttcc
cagaagaaggcggatgaagtgctggagatcttgaagactgcaagcgatgaccgggaatgt
gagaaccagcttgttctgctcctgggctttaacaccttcgacttcattaaagtcctgcgg
cagcaccggatgatgatcctgtactgcactttgctggccagtgcgcaaagtgaagctgaa
aaagaaaggataatggggaagatggaagcagatcccgagctgtcgaagttcttgtatcag
ctgcacgagacagaaaaggaggatctcatccgggaggaacgctctcgccgtgagcgtgtt
cgtcagtcccggatggatacggacttggagaccatggatctggatcaaggaggagaggca
ctggctccccggcaggtgctggacttggaggatctggtgtttgcccaaggtagtcacttc
atggccaacaagcgatgccagctccccgatggttccttccgcaggcagcgcaagggctac
gaggaggtgcacgtgcctgccctgaagccaaagccttttggctcggaagagcaattggtt
tctgtggaaaagttacccaaatacgcccaggctggattcgagggatttaaaacactgaac
cgtattcagagcaaactctaccgcgctgcgctggagtcggatgagaacttgctgctgtgt
gctcccacgggtgctgggaagacgaacgtggcgctcatgtgcatgttgcgagaaataggg
aaacacattaatatcgatggaaccatcaacgtggacgatttcaagattatctacatcgcg
cccatgaggtccttggtgcaggagatggtgggcagcttcgggaagcgcctggcgacttac
ggcatcaacgtggctgagctgacgggggatcaccagctgtgcaaggaggaaatcagcgct
acccagatcatcgtctgcaccccggagaagtgggacatcatcacccgcaagggaggagaa
cgcacttatacccagctggtgcggctggtcatcctggatgagatacacctactgcatgat
gaccgaggacctgtcctggagtctttggtagctagagccatccgcaacatcgagatgact
caggaggacgtgaggctcgttggcttgagtgccaccctccccaactacgaggacgtggct
acgttcctgagagtggacccggccaaaggcttattctattttgataacagcttccgacca
gtgcccttagaacagacatatgtgggtattacagagaagaaagcaatcaaacgcttccag
ataatgaatgagattgtttatgagaagattatggagcatgctggaaagaaccaggtgctg
gtgttcgttcactccaggaaggagactgggaagacagctcgggccatcagggatatgtgc
ctggagaaagataccctgggcctcttcttgcgggagggctcagcctccaccgaggtcctg
aggaccgaagctgagcagtgcaagaacctggagctgaaggacctccttccttacggcttc
gccattcaccacgccgggatgacgcgagtggaccggacactggtggaggatctgtttgct
gacaagcacattcaggtgctggtctccacagccacgctggcctggggggtgaacctgccc
gctcacaccgtcatcatcaaggggacgcaggtgtacagccccgagaaggggcgctggacc
gagctgggtgctctggacatcctgcagatgctggggcgtgccgggaggcctcagtacgat
accaaaggagaggggatcctcatcacgtcccacggcgagctgcagtattacctgtctctg
ctcaaccagcagctccccattgaaagtcagatggtgtcgaagctcccagacatgctgaat
gcggagactgtgctcggcaatgtccagaacgcaaaggatgcggtgaattggctgggctat
acctacctgtacatccgaatgctgcgctcccccactctctacgggatatcccacgatgat
ctgaagggagatccgctgctggaccagcgccgcctggatctggttcacactgcagccctc
atgttggacaaaaacaacctggtgaagtacgacaagaagacggggaacttccaggtgaca
gagctgggccgcatcgccagccactactacatcaccaacgagacgatgcaaacttacaat
cagctcctgaaacccaccctgagtgaaatcgagctgtttcgggtcttctcgctgtcctca
gagtttaggaacatcaccgtgagggaggaggagaagctcgagcttcaaaagttgctggag
cgagttcccatcccggtgaaggagagcatagaggagcccagtgccaagatcaacgtgctc
ctccaggccttcatctcccaactgaagctggaaggatttgctctcatggcagacatggtg
tacgttacccagtctgctgggaggctgatgcgtgccatcttcgagattgtcctgaaccgt
ggctgggcccagctcactgacaagacccttaacctctgcaagatgatcgacaaacggatg
tggcagtccatgtgccctttgcgccagttcaagaaactgcctgaagaagtggtgaagaaa
atcgagaagaagaatttcccatttgaacggctctatgacttgaaccataacgaaataggg
gaactgatccgaatgcccaagatgggcaagacaatccacaaatacgttcatctgtttcca
aagctggagctctcggtccacttgcagcctattacccgctccaccctgaaagtagagctc
accattgcccccgacttccagtgggatgaaaaggtacacggttcatccgaagctttctgg
atcctggtggaagatgtggacagcgaagtgatcctgcaccacgagtacttcctcctgaaa
gccaagtacgcgcaggacgagcacctcgtcaccttcttcgtgcccgtgtttgagccgctg
cccccgcagtacttcatccgggtggtctccgaccgctggctctcttgtgagacccagctg
cccgtttccttccgccacttgatcctccctgagaagtaccctcctccgaccgagctgctg
gatctgcagccgctgcccgtctcggctctgcgaaacagtgccttcgagagcctctaccag
gacaagttccctttcttcaaccctatccagactcaggtgtttaacacggtttataacagc
gacgacaacgtgtttgtgggtgcccccacgggaagcggaaagaccatttgtgctgaattt
gccatcctgaggatgttgctccagaactcggagggtcgctgcgtgtacatcacccccatg
gaggccctggcagagcaggtcttcttggactggtacgaaaagttccaggagcgtcttaat
aagaaggtggtcttgctgacgggggagaccagcactgacctgaagttgctgggcaaaggg
aacatcatcatcagcacccctgagaaatgggacatcctctcacgacgctggaagcagcgc
aagaatgtccagaacgtcaacctcttcatcgtggatgaagtgcatctcatcgggggtgaa
aatgggccagtgctggaggtcatctgctcccgcatgcgctacatctcctcccaaatcgag
cgacccatccgcatcgtggccctcagctcatccctgtccaacgccaaggacgtggctcac
tggctgggctgcagtgccacctccaccttcaactttcatcccaacgtccgccccgtgccc
ctggagctgcacattcagggcttcaacatcagccacacgcagactcgcctgctctccatg
gccaagcctgtctaccatgccatcatgaagcactcacccaaaaagccggtcatcgtcttc
gtcccgtcccgcaagcagacgcggctcacggccatcaacattctcaccacgtgcgcctcg
gatgtccagaggcaaaggttcctgcactgcgcagagaaggatctggtaccgtatctggac
aagctaaacgacaacactctgaaggagacgctcgtcaacggggtgggctacctgcacgag
gggctgaccgccatggaacggcgagtggtggagcagcttttcagctctggtgcggttcag
gtgatggttgcctcccgcagcctctgctggggtatgaacattgccgctcacctggtgatc
atcatggacacgcagtactacaacggcaagatccacgcgtatgtggattaccccatctac
gacgtgctgcagatggtgggccacgctaatcgcccgctccaggatgacgagggccggtgt
gtgatcatgtgccaaggatccaagaaggatttcttcaagaaattcctctacgagcccctg
ccggtggagtcgcacttggaccactgcatgcacgatcacttcaatgccgagattgtcacc
aaaaccatcgaaaacaagcaggatgcggtggactacctcacttggacgttcctgtatcgc
aggatgacgcagaatccaaactactacaacctgcaaggtgtgtcccacaggcatctctcg
gatcatctgtccgagctggtggaacagaccctcagtgacctggagcagtccaagtgcatc
agtatcgaggacgagatggacgtggctcctctaaacctggggatgatcgccgcctattac
tacatcaactacaccaccatcgagctcttcagcatgtccctcaacgccaagaccaaggtg
cgagggctaattgaaatcatctccaacgctgccgagtacgagaacatccccatcaggcac
cacgaggacaacttgttgcggcagctggcccaaaaagttcctcacaagctgaccaacccc
aaattcaacgatccccacgtcaagaccaacctcctgctgcaggctcacttgtcgcgcatg
cagctgagcgccgagctgcagtcggacaccgaggaaatcctcagcaaggcgatccggctg
atccaggcctgcgtggacgtgctgtccagcaacggctggctcagccccgcgctggccgcc
atggagctggcgcagatggtgacgcaggccatgtggtcgaaggattcctacctcaagcag
ctgcctcacttcacctctgagcacatcaagcgctgcacggacaagggggttgagagcgtc
ttcgacatcatggagatggaggacgaggaccggaatgccctgctgcagctctcggacgcc
cagattgccgacgtggctcgattctgtaaccgttaccccaacatcgagctctcctatgag
gtggtggagaaggaaagcatccgcagcggggggcccgtggtggtgctggtgcagctggag
cgtgaagaggaggtcaccgggcctgtcatcgctccccttttcccacagaaacgcgaggag
ggttggtgggtggtgatcggcgactccaaatccaacagcctcatatccatcaagcgattg
acgctgcagcagaaagccaaggtgaagctggatttcgtggcccctgctacggggacgcac
aactacacgctgtatttcatgagcgacgcttacatgggctgtgaccaggagtacaagttc
agcgtggatgtgaaggaggcggaaagcgacagtgactccgactaa
DBGET
integrated database retrieval system
