Fulmarus glacialis (Northern fulmar): 104084167
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Entry
104084167 CDS
T08370
Name
(RefSeq) collagen alpha-1(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
fga
Fulmarus glacialis (Northern fulmar)
Pathway
fga04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
fga00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104084167
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
fga00536
]
104084167
Glycosaminoglycan binding proteins [BR:
fga00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104084167
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
104084167
NCBI-ProteinID:
XP_009586203
LinkDB
All DBs
Position
Unknown
AA seq
1139 aa
AA seq
DB search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NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggatggacaaacaggtcccaaggggaatgtgggtcctcaaggtgagccgggtccccca
ggacagcagggtaacccgggtgctcagggtcttccaggtccacaaggcgcgattggtccc
ccaggagagaaagggccgctgggcaaacccggtcttcctggcatgcctggtgcagatggt
cctccgggtcatcctggcaaggaaggtcctcctggagagaaggggagtcagggtccacca
ggtcctcagggccccatcggttatccaggaccacgcggagtcaagggagcagatggtgtt
cgtggattgaaaggcaccaaaggtgaaaagggtgaagatggtttccctggcttcaaaggc
gatatgggcatcaaaggagaccggggggaaatcggacctcctggcccccgaggtgaggat
ggtcctgaaggtcccaaaggtcgctctggccccaatggagatcctggtcctcttggtcct
gctggagagaagggaaaactcggcgtgccaggactgcccggctacccaggcaggcagggc
ccaaagggctcaatcggcttcccaggatttccaggagccaacggagagaagggcacacgg
gggacacctggcaaaccaggtccaagggggcagcgcggtccaacgggtccacgtggggaa
agaggccctaggggaagcaccgggaaacccggcccaaagggcaactctggtggtgatggc
ccccctggtcctcctggcgaaaggggaccaccagggcctcaaggaccaactggatttcct
ggaccaaaaggcccccctggtcctcctgggaaggatggattgcctggtcaccccggacag
agaggagagactggtttccaaggcaaaactggccctccaggaccccctggtgtcgtaggc
cctcagggtccgactggtgagactgggccgatgggtgagcggggacatccaggccctccg
ggtcccccgggtgaacaaggtcttcctggcctcactggaaaagaagggaccaagggtgac
cctggtcccgccggcctcccagggaaggacggtcccccgggcttgcgaggcttccccgga
gagagaggtctccctggccccattggtgctccagggctgaaaggcaacgaaggtccccca
ggccccccaggtccagcaggctctcctggggagcgtggtcccgcgggatcagccggcccg
ataggcttgccagggcgacctggcccccagggacctccgggacccgcaggtgaaaaggga
gccccaggcgagaagggtcctcagggaccagccggccgggatggcatccagggcccagtg
ggactcccaggtccggcaggtcctgtcggcccccctggagaggatggagacaagggcgag
atcggggagcctggccagaagggcagcaagggggacaaaggggagcagggtccaccaggt
cctaccggcccacagggtccgattggtcagcctggcccagctggtgctgatggagagcca
ggtcccaggggacagcaaggcctttttggtcagaaaggtgatgaaggaccccgaggtttc
cctggtccccctggcccagtgggcttgcagggcttgcctggaccgcctggtgagaaggga
gaaacgggtgacgttgggcaaatgggcccgccaggcccacctggaccaagaggtccatct
ggaccaccaggagcagatggtccacagggtcctcccgggggaataggaaatcctggtgca
gtaggagagaagggtgaacctggtgaatctggtgagcctggtcttcctggcgaggttggc
ctcccgggtcctaaaggtgaaagaggtgaaaagggtgaagcaggtccttctggtgctgct
ggtccacctggccccaaaggtccaccaggcgatgacggtcccaaaggcagccctggtcca
gttggttttcctggtgaccctggtcctcctggagaacctggtccagctggtcaagatggt
ccccctggtgacaaaggtgatgatggcgaacctggacagactggttcccctggtcccacg
ggagagccaggcccctccggacccccagggaaaaggggccctcctggtccagctggtcct
gaaggcaggcaaggagagaaaggagccaagggtgaagctggtttggaaggacctcctggg
aagactggcccaattggtccccaaggtgctccagggaagcccggccccgatggccttcga
ggaattcctggtccagtcggtgaacaaggtctcccgggatcccctggcccggatggtcct
ccaggcccaatgggcccaccgggtttgcctggccttaaaggagactctggtcctaaaggg
gagaagggtcatccaggtttaattggtcttattggaccgccaggagagcagggagaaaag
ggcgacagaggtctcccaggcccccaaggctcagcaggacccaaaggagagcagggtatc
acaggtccttctggaccaattggacctccagggccaccaggattaccgggtccacctggt
cccaaaggtgctaaaggatcatcaggtccaacaggtccaaagggtgaatcgggtcttcct
gggcccccagggcctcctggtcctcctggagaagtcatccagccactgcccatccagtct
tccaagaggaccaggcgaaacatcgacgccagccagctggtggacgatggaaatgccgac
aactacatggactatgcagatggcatggaggaaattttcggctcactgaattccttgaaa
ctggaaattgagcaaatgaagcatccattgggcactcaacataacccagcacgtacctgc
aaggatctgcagctctgtcaccccgatttcccagacggtgaatactgggttgatcctaac
caaggatgttccagggactctttcaaagtttactgtaacttcacagctggtggagagact
tgcatcttccctgataagaaatctgaaggagctagaattactgcttggccaaaggaaaac
ccaggctcctggttcagtgaattcaagcgcggtaaactgctctcctacgtggattctgat
gggaaccccatcggagtggtgcagatgactttcctccggctcctgagcgcttcggcccac
cagaacatcacttacaactgctaccagtccgtagcctggcacgatgccaccaccgacagc
tacgacaaggccatccgcttcctgggctccaacgacgaggagatgtcctacgacaacaac
ccctacatccgagccgccctcgacggctgcgcggcaaagaagggctatcagaagactatc
ttggaaatcaacacacccaaagtagagcaagtacctatagtcgacatcatgttcaatgac
ttcggagaagcgtcacagaaatttggattcgaggtgggaccagcttgcttcatgggctaa
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