Flavisolibacter ginsenosidimutans: FSB75_04840
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Entry
FSB75_04840 CDS
T06122
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fgg
Flavisolibacter ginsenosidimutans
Pathway
fgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSB75_04840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgg03019
]
FSB75_04840
Enzymes [BR:
fgg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FSB75_04840
Messenger RNA biogenesis [BR:
fgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FSB75_04840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HEM4
P-loop_SecA
UvrD_C
Utp25_C
Shikimate_DH
CheB_methylest
Cas3-like_C_2
ERCC3_RAD25_C
T3SS_LEE_assoc
Motif
Other DBs
NCBI-ProteinID:
QEC55259
UniProt:
A0A5B8UGK1
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All DBs
Position
1165586..1166719
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AA seq
377 aa
AA seq
DB search
MLFDQIGLTPPLLKALKQEGYTTPTPIQHQAIPHALAGKDILGLAQTGTGKTAAFALPIL
QKLSAQALGNGYRYTRALILTPTRELALQISESFASYGRYTGLKHEVIFGGVPQTPQTLA
LRDGVDVLIATPGRLLDLMNQGYVYLDYLETFVLDEADRMLDMGFIHDVKRIIKILPAQR
QTMLFSATMPPQITQLASSLLHQPVRVEVTPVSSTAEKIEQSVYFIPKQYKQSLLVHLLS
EKNIQRTLVFTRTKHGADKIAKQLKKANIQADAIHGNKSQAARQNALVNFKRGKLKVLVA
TDIAARGIDVDALEHVINYDLPDVAETYVHRIGRTGRAGASGTAISFCDGKEEMSNLRSI
NKLIGLKIPAVAHPFEG
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgatcaaattggtttgacgccgcccttactgaaggcgctcaaacaagagggt
tatacaacacccacacccattcagcatcaagccataccccatgcgttagctggaaaggat
attttaggccttgcgcaaacaggtaccggaaaaacagcggcctttgcgctacccatcctg
caaaaactaagtgcacaggcattgggcaacggctataggtacacgagagccttgattctt
acgcccactcgcgaactggcgcttcagataagcgaaagttttgcaagctatggccgctat
actggcctgaagcacgaagtgatctttggcggtgttccgcaaaccccacaaacgcttgcc
ctgcgcgacggtgttgacgtgttgattgcaacacccggccgccttctcgacctgatgaat
caaggttatgtttaccttgattacctggaaactttcgtcctcgacgaagctgaccgcatg
ttagacatgggctttattcacgacgtaaaaagaatcatcaaaatcctgccggcgcaaaga
cagacaatgttgttctcggccaccatgccgccgcagattacacaactggcttcctcgctt
ttgcatcaaccggtgagagtagaagtaacgcctgtttcgtcaacagccgaaaaaattgag
cagtcggtttactttattccgaagcaatacaagcaatcattgttggtgcatctgctgagc
gaaaaaaacattcagcggacgctggtgtttacccgtacaaagcacggtgccgacaagatt
gcaaaacaattaaagaaggcaaatattcaggccgatgccattcacggcaacaagtcgcag
gcggcccgacaaaatgccctggtaaacttcaaaagaggaaaattgaaagtattggtggca
actgatatcgcagcaagaggcattgacgtggatgcactggaacacgttattaattatgat
ttgcccgatgtagcggaaacttatgtgcatcgcattggcagaaccggacgagccggcgcc
agcggcacagcaatctctttctgcgacggaaaagaagaaatgagcaacctccgaagcatc
aacaaacttattggtttaaaaatacctgcggtggcgcatcctttcgaaggctaa
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