Flavisolibacter ginsenosidimutans: FSB75_16395
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Entry
FSB75_16395 CDS
T06122
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fgg
Flavisolibacter ginsenosidimutans
Pathway
fgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSB75_16395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fgg03021
]
FSB75_16395
03019 Messenger RNA biogenesis [BR:
fgg03019
]
FSB75_16395
Transcription machinery [BR:
fgg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FSB75_16395
Messenger RNA biogenesis [BR:
fgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FSB75_16395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
AAA_22
OB_RNB
Mor
Presenilin
Motif
Other DBs
NCBI-ProteinID:
QEC57414
UniProt:
A0A5B8UL72
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All DBs
Position
3865347..3867035
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AA seq
562 aa
AA seq
DB search
MYDILQLNDMLLPELQDVADELKIENAKKLSKQDLVYKILDKQAVVGGPSKGNAMTSERP
KRKRIIKATTSNTTEEAVVEDTSVPAIEAAAEEPKKHTAHKKTAAAAPRKEAPQKRGRKK
PEEEPATEPNLFTNERAAEETEQTTEAEQQADETTSSPDVNIEIPERGSQITKFFPQRRE
QQQQQQSFNIEFDGIIMAEGVLEMMPDGYGFLRSSDYNYLSSPDDIYVSPSQIKLFGLKT
GDTVFGSVRPPKEGEKYFALLKVDQINGKSPEEVRDRVPFDYLTPLFPYEKLNLFDEPNN
YSTRIMDLFTPIGKGQRGLIVAQPKTGKTMLLKAVANAIAKNHPECYLMVVLVDERPEEV
TDMERSVKAEVIASTFDEPAEKHVKVSTVALQKAKRLVECGHDVVILLDSITRLARAHNT
VAPASGKVLSGGVEANAMQKPKQFFGAARKIEHGGSLTIIATALVDTGSKMDEVIFEEFK
GTGNMELQLDRRLANKRIFPAIDIVASSTRRDDLLLERDVLQRMNLLRVYLNDMNTEEAM
SELLKRMRGTKSNEEFLASMNG
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacattttgcagttgaacgacatgctcctgcccgaattgcaggacgttgcagat
gaattaaaaattgagaacgccaaaaaattaagcaaacaagacctcgtttataaaatactg
gacaagcaagccgtggtgggcggtccctcaaagggaaatgcgatgaccagcgaacgtccc
aaacgcaaacgcattattaaagccaccacgtccaacaccaccgaagaagccgtggtagaa
gacacgtcggttccggccattgaagccgccgccgaagaaccaaaaaaacacacggcgcac
aaaaaaaccgcggcggctgcgcccaggaaagaagcgccgcaaaagcgcggccgcaaaaag
cccgaagaagaaccggcaacagaacccaatctcttcacaaacgaacgggccgcagaagaa
acagaacaaacaactgaagcggaacaacaagccgatgagacgacttcatcgcctgacgtg
aatattgaaatcccggaaagaggttcacagataacaaagttttttccacaacgccgcgaa
caacaacaacagcaacaatcgttcaacatcgaattcgacggcatcatcatggccgaaggt
gtgctggaaatgatgcccgacggttacggcttccttcgctcttccgattacaactatctt
tcttcacccgatgatatttacgtatcgccttcgcaaatcaaattgtttggtttgaaaacc
ggcgacacggtttttggttcggttcgtccgccaaaagaaggcgagaaatattttgccttg
ctgaaggtggaccagatcaacggcaagagtcctgaagaggttcgcgaccgcgtgcccttc
gattacctaacgccgctgtttccttacgaaaagctcaacttgtttgatgagccgaacaat
tattctacccgcatcatggacttgtttacgcccatcggtaaaggccagcgcggactgatt
gtggcgcaaccgaaaacgggtaaaacaatgctcttaaaagccgtggctaacgccatcgcc
aaaaaccaccccgaatgttatttgatggtggtgctggtggacgaacgtcccgaggaagta
accgacatggaacgcagtgtgaaggccgaggtaattgcttccacctttgacgaacctgcg
gaaaaacacgtaaaggtttcaaccgtggctttgcaaaaagcaaagcgtttggtggaatgc
ggtcacgatgttgtgattctgcttgattctatcactcgtttggcccgtgcgcacaacacc
gtagcaccggcatcgggcaaagtattgtcgggcggtgtagaagccaacgccatgcaaaag
cccaagcaattctttggcgcggcccgtaaaatagaacacggcggttcgctcaccatcatt
gctacggcgctggttgataccggttcgaaaatggacgaagtaatttttgaagaattcaaa
ggaacgggcaacatggaattgcagcttgaccgccgcttggccaacaagcgtatcttcccc
gctattgatattgtagcgtcctctacacgccgcgatgatttgttgttggaaagagatgtg
ctgcaacgcatgaacctgcttcgcgtttacctgaacgatatgaataccgaagaagccatg
agcgaactgctcaagcgcatgagaggaaccaaaagcaacgaagagttccttgcttcaatg
aacggataa
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