Flavisolibacter ginsenosidimutans: FSB75_18630
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Entry
FSB75_18630 CDS
T06122
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fgg
Flavisolibacter ginsenosidimutans
Brite
KEGG Orthology (KO) [BR:
fgg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fgg03016
]
FSB75_18630
Enzymes [BR:
fgg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FSB75_18630
Transfer RNA biogenesis [BR:
fgg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FSB75_18630
Prokaryotic type
tRNA splicing ligases
FSB75_18630
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEC57833
UniProt:
A0A5B8UMP8
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All DBs
Position
4364156..4365622
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AA seq
488 aa
AA seq
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MPRLQLTGKELRAIGYPQGPVISLAMNIMEKNFRHLAKTDALEILSSILQSPNQYAHDGV
LNKIAEALLPKPKAGGDELPLAEKGIDFNVFGAGGIEQGALHQMYTATKLPVAVAGALMP
DAHHGYGLPIGGVLATENAVIPYGVGVDIGCRMCLSIFDINPKELADREHFFTRELNEAT
LFGSGSTFQKAADHEVMYRKEFDELGLLKGLQDRAWKQLGSSGSGNHFVEWGIVEIKEKD
QVLGVEAGTYVGLLSHSGSRALGANVANHYTKVAKEKRRLPGDAVNLAWLSLDEQEGVEY
WMAMNLAGDYASACHHVIHEKIAKQLGRKPLKMVENHHNFAWKENREGKEVIVHRKGATP
AGKDVLGIIPGSMAAPGFVVKGKGEMSSVNSASHGAGRKMSRTAALKTVTHKELNEVLAK
QGVKLLGGGLDEAPFAYKDIHEVMKAQSSLVETVGVFFPKIVKMDGAQPKRWKKKNRDEN
SRDLLMGE
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtcttcaactcacaggcaaagaactccgcgccatcggctacccccaaggtccg
gtgatttctcttgccatgaacatcatggaaaagaacttcaggcatcttgcaaagacagat
gcattggaaatattgagcagcattttgcaaagccctaaccaatacgcacacgacggtgtg
ctgaacaaaattgcagaagcgttattgcccaaaccaaaagcgggtggtgatgaattaccg
cttgcggaaaaaggcattgacttcaacgtgtttggtgccggaggaatcgagcaaggcgct
ttgcatcaaatgtacacggcgacaaaacttcctgttgctgttgccggtgcgctcatgccc
gatgcgcatcacggttatggcttgcccattggcggcgtgctggcaacggagaatgctgtt
attccttacggcgtgggtgtggacattggctgccgcatgtgcctttctatttttgacatt
aatcccaaagaacttgccgaccgcgaacattttttcactcgtgagttaaacgaagcaacg
ctcttcggcagcggttctacctttcaaaaagccgccgaccacgaagtgatgtaccgaaaa
gaatttgacgaactgggtttgctcaaaggtttgcaggatcgtgcgtggaaacaacttggc
tcttcgggttcgggtaaccactttgttgagtggggtattgtggagataaaagagaaagac
caagtactcggtgttgaagccggcacttacgttggcttactttcacattccggttcgcgg
gccttgggtgcaaacgttgcaaaccattacacgaaagtggctaaagaaaaacgccgcttg
cctggtgatgccgtaaaccttgcatggctttcgctggacgaacaagaaggcgttgaatac
tggatggcgatgaatcttgccggtgattacgcttcggcttgtcaccacgtgattcacgag
aagattgccaaacaacttggccgcaagccgctgaagatggtggagaaccatcacaatttt
gcgtggaaggaaaaccgggaaggcaaagaagttatcgtgcatcgtaaaggcgcaactccc
gcaggaaaagatgtgctgggcatcattcccggttcaatggccgcgccgggctttgttgtg
aaaggaaaaggggagatgtcatctgtaaattccgcttcgcacggcgccggaagaaagatg
agccgtacggccgcattaaaaaccgtcacgcacaaagaactgaacgaagtattggcaaag
cagggtgtaaaacttttaggcggtggtttggatgaagcgccgtttgcttacaaagacatt
cacgaagtaatgaaagcgcaaagttcgttggtagaaacggttggggtcttctttccaaaa
attgtaaaaatggacggtgcgcaaccgaagcggtggaagaaaaagaaccgtgatgaaaac
agccgtgatttgttaatgggcgaatag
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