Flavisolibacter ginsenosidimutans: FSB75_20725
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Entry
FSB75_20725 CDS
T06122
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fgg
Flavisolibacter ginsenosidimutans
Pathway
fgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSB75_20725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgg03019
]
FSB75_20725
03009 Ribosome biogenesis [BR:
fgg03009
]
FSB75_20725
Enzymes [BR:
fgg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FSB75_20725
Messenger RNA biogenesis [BR:
fgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FSB75_20725
Ribosome biogenesis [BR:
fgg03009
]
Prokaryotic type
rRNA helicases
FSB75_20725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
PDH_C
Motif
Other DBs
NCBI-ProteinID:
QEC58226
UniProt:
A0A5B8UP41
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All DBs
Position
4859814..4861481
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AA seq
555 aa
AA seq
DB search
MATFGELGLNEEILKSVEELGFTQPTPIQEKAIPVLLSGTKDLIGLAQTGTGKTAAFGLP
LLQLIDSAKKYPQALIVCPTRELCLQIVSEVENFKKHTRNVHLVAVYGGSSITQQIRDIR
RGVHVVVATPGRLIDLIERKAINLEEISYVVLDEADEMLNMGFQDDIEFILQNTPKREST
WLFSATMPPEIRNVSKRYMKDPFEITVGKKNTANKNVDHQFVVTAAHHRYETLKRLIDFN
PGMYGIIFTRTKADAQEIAEKLTREGYDIDALHGDLTQQQRNKVMDEFREKTLQLLIATD
VAARGIDVQGITHVINYELPDDIEVYTHRSGRTGRAGKTGVCISIVHVREAYRIRDIERM
VQVPFHKLEIPSGKDVCRKQFFYFMDKLLATDISHGDYESYLPMLAEKFADISKEEVLKR
VAALEFDRFLKYYENAEDLNVRERRDDRRGSERQSDRGGERRRDTRGREFGGGGNTTRLF
VNLGTKDGFYKASFLQFILDMSDLGKDVLGRIDMKEMNSWVEVEKGAAQKMMQAIDGKKY
KGRRIRMNEADSVRR
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcaacatttggtgaactcggattgaacgaagagatactgaaatccgttgaagagctg
ggctttacgcaaccaacacccatccaggaaaaggcaatcccggtgctgctttccggcaca
aaagatttaattggcctggcacaaaccggcaccggcaaaaccgctgcctttggccttccg
cttttgcaattaattgattccgcaaaaaaatatccgcaggcactcattgtttgtcctacg
cgggaactctgcctgcaaattgtaagcgaagttgaaaacttcaaaaaacacacacgcaac
gttcatctcgttgcggtatatggtggttcttccatcacgcaacaaattcgcgacatccgc
cgcggcgtgcatgttgtggtggccacgccgggccgattgattgatctaatcgagcgcaag
gcaattaaccttgaagaaatcagctacgtggttttggacgaagccgacgagatgctgaac
atgggctttcaggacgacatcgaatttattttacagaacacgcccaagcgtgaaagcacc
tggcttttcagcgcaacgatgccgccggaaattcgaaacgtaagcaagcggtacatgaaa
gatccgttcgagattaccgttggcaaaaagaatacagccaacaagaacgtggatcatcaa
tttgtggtaacagcggctcatcatcgttacgaaacgctcaagcgtctgattgattttaat
cccggtatgtacggcatcatcttcacccgcaccaaagccgatgcgcaggagattgccgaa
aagctgacaagggaaggatacgacattgatgcgctgcacggtgacttaacgcagcagcaa
cgcaacaaagtgatggacgagtttcgcgagaaaaccttgcaacttttgatcgcaacagac
gttgcggcccgcggcattgacgtgcaaggcatcacacacgttatcaattacgagctgccc
gatgatatcgaagtttacacacaccgcagcggccgtacagggcgggctggcaaaacaggg
gtttgtatttccatcgtgcacgtccgcgaagcttaccgcatccgtgacattgagcgcatg
gtacaagtgccttttcacaagctcgaaattccgtcgggcaaagacgtttgccgcaagcaa
ttcttttatttcatggacaagttgctggcaaccgacattagccacggcgattacgaatct
tatttgccaatgcttgcagaaaaatttgccgacatcagcaaagaagaagtattgaaaaga
gtggctgcgttagaatttgaccgcttcttaaaatattacgagaatgccgaagaccttaac
gttcgcgaacgtcgcgatgatagaagaggaagcgaaagacaaagcgatagaggcggcgaa
cgaagaagggatacaagaggcagagagtttggcggtggtggaaacacaacccgtttattc
gtaaacctcggaaccaaagatggcttttacaaagcaagtttcctccaatttattttggac
atgagcgatttgggcaaagacgttctcggccgcattgacatgaaggaaatgaacagttgg
gtagaagtagagaaaggcgctgcgcaaaagatgatgcaggctattgacggaaaaaaatac
aagggccgccggatacgaatgaatgaggcggatagtgtgcgcagataa
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