Fimbriimonas ginsengisoli: OP10G_1964
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Entry
OP10G_1964 CDS
T03038
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fgi
Fimbriimonas ginsengisoli
Pathway
fgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OP10G_1964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgi03019
]
OP10G_1964
03009 Ribosome biogenesis [BR:
fgi03009
]
OP10G_1964
Enzymes [BR:
fgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OP10G_1964
Messenger RNA biogenesis [BR:
fgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OP10G_1964
Ribosome biogenesis [BR:
fgi03009
]
Prokaryotic type
rRNA helicases
OP10G_1964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
Cas3-like_C_2
CMS1
Pop8
Motif
Other DBs
NCBI-ProteinID:
AIE85332
UniProt:
A0A068NPM8
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All DBs
Position
2108045..2109871
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AA seq
608 aa
AA seq
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MPKPNKETKRKGEAPPKRKAGAKSVVPKKAKREDFLLDPKFKKAKPAAAGGPPKEKKARA
PRPDAVPEFTPVPPLVRVPAPVEPTTFAELGLDEPIVRAVAEMGFETATPIQAQAIPVLI
VGGDLIGQAQTGTGKTAAFALPIIQKVDADLRKTQALVLAPTRELAVQVAGGIHDLAKHT
TLRVVPVYGGQPIDRQFRALAQGAHIVVGTPGRVLDHLRRGSLSLADVKICVLDEADEMM
ALGFAEDMEAILSQLPDTRQLACFSATMPPRVKTLTERFLRDARHIAIDSQHRTVDNTNQ
TYYEVPKGKKLEALARVLDMETPGSTIVFCRTRQDTNDLTEALRLRGYNAEALHGDMGQT
ERDRVMRRFRDGQADLLIATDVAARGLDVDSVTHVINYDIPWDVEQYIHRIGRTGRAGRS
GDAITLVTGKERRQLLFIERMTGAPIKPARIPTAADISARRRELFAGSLRDALEARNFDG
HLATVEELAEEYDHSEIAAAALQLLWESRHDAVDSVAEELAIDFEQPEQGMSRLFIGMGR
QDGLRPGDLVGAITNEAGLIGKAIGVIDILDRTAFVEVPAGDAERVIQALENAKIRNRRV
KVQLARPR
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagccaaacaaagaaacgaaacgtaagggagaggcgccgcctaagcgaaaggcc
ggagcgaagtccgtcgtccctaaaaaagcgaagcgcgaagacttccttctcgacccgaaa
ttcaagaaagcgaagcccgccgccgccggtggcccgcctaaggaaaagaaggcgagggcc
cctcgcccggatgccgttccagagttcactcccgtgcctccgctcgttcgggttccggcc
ccagtcgagccgacgacgttcgcggaacttggactcgacgagccgatcgtccgcgcggtc
gcggagatgggtttcgagacggcaaccccgattcaagcccaggcgatcccggttcttatc
gtcggtggcgacctcatcggtcaggcccaaaccggcaccggcaagacggcggcgttcgcc
ctgcccatcattcaaaaggtcgacgcagatctgaggaagacccaggccctcgttctcgcc
cccacgcgcgagctcgcggttcaggttgcgggcggcatccacgaccttgccaagcacacg
acgcttcgggtcgtcccggtttacggcggccagccgatcgaccgccagttccgcgccctt
gcccagggggctcacatcgtcgtgggaactcccggacgcgtgctcgaccaccttcgccgt
ggctcgctttcgctcgccgacgtcaagatctgcgtcctcgacgaagctgacgagatgatg
gcgctcggatttgcggaagacatggaagcgatcctcagccaacttccggacacgcgccag
ctcgcttgtttctccgctacgatgcctccgcgagtaaagacgcttaccgagcggttcctg
cgcgacgcccgacatatcgcgatcgactcgcaacaccgcacggtcgacaacacgaaccag
acttactacgaggttccgaaagggaagaagctcgaggcgttggcccgggtgctggatatg
gaaacgccggggtcgaccatcgttttctgccgtacacggcaggatacgaacgacctgact
gaagcgctacgcctgcgcggctataacgcagaggcgctgcacggcgacatggggcaaacc
gagcgtgaccgcgtcatgcgcaggttccgggacgggcaagccgacctgttgatcgccacc
gacgtagccgcccgcggcctcgacgtcgacagcgtcacccacgttatcaattacgacatc
ccgtgggacgtcgagcagtacatccaccggatcggccggaccggccgggcggggcgttcg
ggcgacgcgatcactttggtgaccggcaaggaacgtcgtcagcttctgttcatcgaacgg
atgaccggggcgccgatcaagccggcgcggatcccgaccgccgccgacatctcggcccgc
cgccgtgagctcttcgcagggtccttgcgagatgccttggaggcacgaaacttcgacggc
catttggcgacggtcgaggagttggcggaagagtacgatcactccgaaattgcggccgcc
gcgcttcagcttctgtgggagagccggcatgacgcggtcgactcggtagccgaggagttg
gcgatcgatttcgagcagccggagcagggaatgagccgcctcttcatcgggatgggccgc
caggacggtctacgccccggcgatctggtgggagcgatcacgaacgaggcaggcttgatc
ggcaaagcgatcggcgtcatcgacatcctggaccgcaccgccttcgtcgaggtccccgcg
ggcgacgcggaacgggtgattcaggcgttggagaacgcgaagatccggaatcgccgggtg
aaagtgcaactagccagaccacggtaa
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