Fimbriimonas ginsengisoli: OP10G_4117
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Entry
OP10G_4117 CDS
T03038
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
fgi
Fimbriimonas ginsengisoli
Pathway
fgi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
fgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OP10G_4117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fgi03400
]
OP10G_4117
Enzymes [BR:
fgi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
OP10G_4117
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
OP10G_4117
DNA repair and recombination proteins [BR:
fgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
OP10G_4117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
COMM_HN
Motif
Other DBs
NCBI-ProteinID:
AIE87485
UniProt:
A0A068NXJ7
LinkDB
All DBs
Position
complement(4499878..4500720)
Genome browser
AA seq
280 aa
AA seq
DB search
MPELPEVESVCRMMRRVLGGKKIVSATVADDEIVNSGTPAEAIRSALEGHVVTGVGRKGK
YWWIELDERPWLFGHLGMSGWVRELGKSSQRLHSHGKAPMDDEDGNPRFLKLLIEAEDGS
RVAFTDGRRLGRLWLADGPEVDTRVKRLGFDVYEALPSVEELAKILGKRKAPIKAVLLDQ
GVFAGVGNYLADEMLYQAKIAPKRLSSSLTPEEVKALHTVTRQILKDAVEVDADKDKFPK
NWLFHHRWGGEKGAEAIGGRAIVREQVAGRTTAWVPEIQR
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgccggaagttgaatccgtttgtcgtatgatgcgccgggtgctcggtggg
aagaagatcgtcagcgccaccgtcgccgacgacgagatcgtcaattccgggacgcccgcg
gaggcgatcaggagcgcccttgaagggcatgtggtcaccggcgttggaaggaaagggaag
tactggtggatcgagctggacgagcgcccgtggctgttcgggcacctgggtatgagcggg
tgggtccgggagctcggcaaaagctcgcaacgacttcactcccacggcaaagcgccgatg
gacgacgaggacgggaatcctcggttcctgaaactgctcatcgaagccgaggatggcagc
cgggtcgcatttaccgacggccgccggcttggccggctatggctggcagatggtccggaa
gtggacacgagggtgaagcggctggggttcgacgtgtacgaagccttgcccagtgtggaa
gagctggccaagatccttggaaagcgcaaagcgccgatcaaagcggttctactcgaccag
ggagtgttcgccggggtgggtaactacctcgccgacgagatgctgtaccaggcgaagatc
gcgccgaagcgactttcctcttcgctgactcctgaagaggtcaaagcgttgcatacggtg
acccgccaaatcttaaaagatgccgttgaggtcgacgccgataaggacaaattcccgaag
aactggctcttccatcaccgctggggcggcgagaaaggggccgaggcgatcggggggcga
gcgatcgttcgtgagcaggtagcgggccgaacgaccgcgtgggtcccagaaattcaacgg
taa
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