Fimbriimonas ginsengisoli: OP10G_4121
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Entry
OP10G_4121 CDS
T03038
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fgi
Fimbriimonas ginsengisoli
Pathway
fgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OP10G_4121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgi03019
]
OP10G_4121
03400 DNA repair and recombination proteins [BR:
fgi03400
]
OP10G_4121
Enzymes [BR:
fgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OP10G_4121
Messenger RNA biogenesis [BR:
fgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OP10G_4121
DNA repair and recombination proteins [BR:
fgi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OP10G_4121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
AIE87489
UniProt:
A0A068NYV6
LinkDB
All DBs
Position
complement(4501946..4503754)
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AA seq
602 aa
AA seq
DB search
MESAREVLRQVFGYDQFRLDQEPVIESVMGGRDTFVLMPTGGGKSLCFQIPALLKQGTAI
VVSPLISLMKDQVDALVENGVSAAFLNSSLREAQADKVLRQLHEGQLSLLYVAPERLMMQ
ETLARLQRVKLSLFAIDEAHCVSQWGHDFRPEYVQLGLIRDRFPEVPFIALTATADSLTR
DDILTRLHLADPQVFVSGFDRPNIRYTVVEKRRPAVQLLEYVKSKPDDSGIVYCLSRKRV
EQVAEGLREAGISAAPYHAGLDAKERARVQDGFQKDDIRVVVATVAFGMGIDKPNVRFVV
HHDMPKNIEGYYQETGRAGRDGLPSEALLMYGTGDIVTVKALIEQSENQAQKQIELKKLN
AMIEMAEAMTCRRGFLLRYFGEIYEGECGNCDVCLTPPEKFDATDDAKKVLMCVYELRQR
FGMRHVVDVLRGSESQKLIDWGHTDLPSYGSGKHWSADEWSSLVRQLVHHGLLIQDAQSY
GVLKLTPQTRPILREGARIELARPRVKVRAERGSRSKSSTPASRPADEELFQELRALRRK
LANEQQVPPYVVFGDAALVGMAASKPKTAAEFLLVSGVGQAKLEKYGEAFMEVIRRHAGS
AI
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggaatccgctcgcgaagtgctgcgccaggtgttcggctacgaccagttccggctggat
caggagccggtcatcgagagcgtgatgggcggacgcgacacgttcgtcctgatgcccacc
ggcggcggtaagtcgctttgcttccagattccagcccttctcaaacaggggacggcgatc
gtcgtgtcgcccttgatctcgctgatgaaggaccaagttgatgcgctcgtggagaacggg
gtctcggcggctttcctcaattccagcctaagggaggctcaagccgataaagtgcttcgc
cagttgcacgaggggcagttaagcctgctctacgtggcgccggagcggctgatgatgcag
gagacgctcgcccggcttcagcgggtgaagctctcgctgttcgcaatcgacgaggcgcat
tgcgtttcgcagtggggacacgacttccggcccgagtacgttcaactcggactcatccgc
gaccgttttcccgaagtaccgttcatcgcgttgacggcgaccgccgattcgcttactcgt
gacgatatcctgacgaggctccacctcgccgaccctcaggtgttcgtctcgggattcgat
cggccgaacatccgttacacggtggtggagaagcggcggccggcggttcagctcctggaa
tatgtgaagtcgaagccggacgacagcggcatcgtctattgcctcagccgcaagcgggtc
gagcaggtggcggaagggctgcgagaagcgggaatttcagccgcgccatatcacgccggg
ctcgacgccaaggagcgggcgcgggtccaagacggatttcagaaagacgatatccgggtg
gttgtcgccaccgtcgcctttggtatggggatcgacaagccgaacgtgcggttcgtcgtg
caccacgacatgccgaagaacatcgagggttattaccaggagaccggccgcgcgggtcgg
gacggactcccctccgaagctctcctcatgtatggaacgggcgacatcgttaccgtcaag
gcgctgatcgagcagagcgagaatcaggctcagaagcagatcgagcttaagaagctgaac
gcgatgatcgagatggcggaggcgatgacctgccggcgcgggtttctgttgcggtacttc
ggtgagatctacgaaggggagtgtgggaactgcgacgtctgcctaaccccgccggaaaag
ttcgacgctaccgacgacgcgaaaaaggttctgatgtgcgtctacgagctccgccaacgg
tttggaatgcggcacgtggtggacgttttgcgtgggtcggagagtcaaaagctgatcgac
tggggccatacggaccttccttcctacgggagcgggaagcattggagcgccgacgagtgg
tcgagcctggtgcggcaactcgtgcaccacggacttctgattcaagacgcacagtcgtac
ggcgtgttgaaactcacgccccagacccggccgatcttgcgggagggagcccgaatcgag
ctcgctcgcccgcgggtgaaggtgcgggccgagcggggatctcgttcgaaatcgtcgact
cccgcttcgagaccggcggacgaggagctgttccaggagcttcgcgccctccggagaaag
ctggcgaacgagcagcaggttcctccctacgtcgtcttcggggacgccgcccttgtcggg
atggcggcctccaaaccgaaaacagccgccgagtttctcctggtatcgggagtcggccaa
gcgaaattggagaagtacggcgaggcgtttatggaggtcatccggcggcacgccgggtcg
gctatctag
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