Flavobacterium gilvum: EM308_00885
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Entry
EM308_00885 CDS
T04609
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
fgl
Flavobacterium gilvum
Pathway
fgl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fgl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EM308_00885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fgl03021
]
EM308_00885
03400 DNA repair and recombination proteins [BR:
fgl03400
]
EM308_00885
Enzymes [BR:
fgl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EM308_00885
Transcription machinery [BR:
fgl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EM308_00885
DNA repair and recombination proteins [BR:
fgl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EM308_00885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AOW08177
UniProt:
A0AAC9I5B7
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All DBs
Position
complement(186979..187971)
Genome browser
AA seq
330 aa
AA seq
DB search
MAIFNFQKPDKVIMIDSTDFEGKFEFRPLEPGYGLTVGNALRRVLLSALEGYAITSVRIE
GVDHEFSTISGVVEDVTEIILNLKQVRFKRQIEDIDNESVTISVSGKDQLTAGDFQKFIS
GFQVLNPELVICNLDSKIKLNFDLTIEKGRGYVPAEENKKQNAAIGTIFTDSIFTPVKNV
KYAIENFRVEQKTDYEKLVFEIKTDGSINPKDALTEAAKVLIHHFMLFSDERITLEADEI
AQTESYDEESLHMRQLLKTKLVDMDLSVRALNCLKAAEVDTLGDLVSFNKNDLMKFRNFG
KKSLTELDELVAIKNLTFGMDLAKYKLDKE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcaatatttaattttcagaagcccgataaagttatcatgatcgattcaaccgatttt
gaaggtaaatttgaatttagacctttagaacctggatacggattgactgttggtaatgca
cttagaagagttttgctttcagcattagaaggttatgctattacatcagttcgtatagaa
ggtgtagatcatgagttttctactatttcaggagttgttgaagatgttaccgaaattatt
cttaatcttaaacaagtacgtttcaaacgtcagattgaggatatagataatgaatcagtt
actatttctgtttctggtaaagatcaattgacagctggagattttcaaaaattcatatca
ggtttccaagttttgaatccagaacttgttatctgtaatttagatagtaaaatcaaactg
aatttcgatttaactatcgaaaaaggtagaggttatgttcctgctgaagagaacaaaaaa
cagaatgctgcaattggaacaatttttacagattctatttttactccggtaaaaaatgta
aaatatgctattgaaaacttccgtgtagagcaaaaaacagattatgaaaaattagttttt
gaaataaaaactgacggatctatcaatcctaaagacgctcttactgaggctgctaaagtt
ctaattcaccatttcatgttgttttctgatgaaagaattacacttgaggctgatgaaatt
gcacaaacagaatcttatgacgaagagtcattacatatgagacaattgcttaaaactaag
cttgttgatatggatctttctgttagagcattaaattgtttgaaagcggctgaagttgat
acacttggtgatttagtatcgttcaataaaaatgacctaatgaaattccgtaatttcggt
aaaaaatctttaactgaactagatgaactagtggcaattaaaaatttgaccttcggtatg
gatttagcaaaatacaaactagataaagaataa
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