Flavobacterium gilvum: EM308_03550
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Entry
EM308_03550 CDS
T04609
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fgl
Flavobacterium gilvum
Pathway
fgl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EM308_03550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fgl03400
]
EM308_03550
Enzymes [BR:
fgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EM308_03550
DNA repair and recombination proteins [BR:
fgl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EM308_03550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AOW08645
UniProt:
A0AAC9I2B5
LinkDB
All DBs
Position
complement(843785..847153)
Genome browser
AA seq
1122 aa
AA seq
DB search
MSKATIYSVYDSSPKTTQIAARLQENNQVKIQLEGLLGSATSFVIQSVFKKAELPFLVVL
NNKEEAAYYLNDLEQMIGEQDVLFYPGSFRRPYQIEETDNANVLLRAEVLNRINSRKKPA
VIVTYPEALFEKVVTRQNLDKNTLKVTVGDKISIDFLNEVLFEYEFKRVDFITEPGEFSV
RGGIVDVFSFSNDNPYRIEFFGNEVESIRTFDVGSQLSLDKKKKITIIPNVENKVFQENR
ESFLDYIAESTVLFFQNTENLLYELDKQFGKAEEAFEKLSKDIKHATPEQLFLGQKEFVK
RALDFSIVEFNSKPVFKTTKKFEFHIQPQPSFNKQFDMLLNNLSDNHFNGYQNYLFCSNE
AQTKRFHDIFESLDEANSENIRKQYNTIVLPLYQGFIDQENQICCYTDHQIFERYHKFSI
KNGYSKKQNLTLKELTTLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIV
YVSIHSLHKISKYNGKDGTPPKIYKLGSSAWKTLKQKTKARVKHIAFNLIQLYAKRRLEK
GFQFAPDSYLQNELESSFIYEDTPDQIKSTQEVKADMESERPMDRLVCGDVGFGKTEVAI
RAAFKAVDNSKQVAILVPTTILAYQHYRTFSERLKDMPVSIGYLNRFRTAKQKTETLKQL
AEGKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPI
PRTLQFSLMAARDLSVITTPPPNRYPIETNVVGFNEELIRDAISYEIQRNGQVFFINNRI
ENIKEIAGMVQRLVPSARVGIGHGQMDGGKLEELMLAFMNGEFDVLVATTIIESGLDVPN
ANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSHMTDDARKRIQALEQFSEL
GSGLNIAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKIMNEAIEELKENEFKDLYPEEN
NIETKEYVKDLQIDTDFELLFSDEYINNVTERLSLYNELADVKNEEELIVFQNKLIDRFG
PMPPRALALMNSIRIKWIATRVGIEKLVMKKGKMIGYFVSDQQSDFYHSKRFHKVIQFVQ
THSNICVMKEKQTPAGLRLLLTFDNVKNTRTALEFMQLLGGE
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaggctactatatattcggtttatgattcttctccaaaaacgactcagattgca
gcccgtttgcaggaaaataatcaggtaaaaatacaattggaaggtttgttgggatcagcg
acctcttttgtaattcagtcggtttttaaaaaagcagaacttccttttttggtagttttg
aacaataaagaagaagcggcttattatttgaacgatttggaacaaatgataggcgagcag
gatgtgttgttttatcccggatcttttcgtcgtccgtatcaaattgaggaaaccgacaat
gctaatgttttgcttcgcgctgaggttttgaatcgaatcaattcccgcaagaaacccgca
gttattgttacgtatccggaggctctttttgaaaaagtggtgacacgccaaaatttggat
aaaaatacgctcaaagttaccgtaggcgataaaatttcgattgatttcctgaacgaagta
ctgtttgaatacgaattcaaaagggttgactttatcacagaacccggtgaattctccgtt
cgtggaggaattgtcgatgtgttttcgttttcgaatgacaatccgtatcgaatagaattt
ttcggaaatgaagttgaaagcatccgaacttttgacgttggaagccaattgtcattggac
aaaaagaaaaaaatcaccattattccgaatgtcgagaataaagtttttcaggaaaaccga
gagagtttcttggattatatagccgaaagcacggttttgttttttcaaaataccgagaat
cttttatacgaattggataagcaatttggcaaagccgaagaagcttttgagaaattgtcc
aaagatattaagcacgccacgccagagcaattatttttgggtcaaaaggaatttgtcaag
cgggcgttggatttttcgattgtggaattcaattccaagccggtttttaaaacgaccaag
aaatttgaatttcacattcagccacaaccgtcgtttaacaagcaatttgatatgttgcta
aataatttgagcgacaaccattttaacggctaccaaaattatctattttgttcgaatgag
gcgcaaactaaacgttttcacgatatatttgaatctttggatgaagccaattccgagaat
atccgcaagcaatacaacaccattgttttgccactttatcaaggatttatcgatcaggaa
aaccagatttgttgttataccgaccatcagatttttgaacgctatcataaattcagcatc
aaaaacggttattcgaagaaacaaaatttaacattaaaggaactcaccactttgtccgta
ggtgattatgtaacgcatatcgatcacggaatagggaagtttggtggtttgcaaaaaatt
caggtcgaaggaaaaacgcaggaagccatcaagttggtgtatgccgataatgatattgtg
tacgtgagtattcactcgctgcataagatttcgaaatacaacggaaaagacggaacgcca
cccaaaatttataaattaggttctagtgcgtggaagactttaaaacagaaaaccaaagca
agggttaaacacatagcattcaatttgattcaattgtatgccaagcgccgactggaaaaa
ggattccaatttgctcctgatagttatctgcaaaacgaattggaaagttcgtttatttac
gaagacactcctgaccaaatcaaatcaactcaggaagtcaaagccgacatggaaagcgag
cgtcctatggatcgtttggtttgtggtgatgtgggatttggtaaaaccgaagtggctatt
cgtgcagctttcaaggctgttgacaatagtaaacaagtcgcaattctcgtccccacgact
attttggcctaccagcattatcgtacttttagcgaaaggctaaaagatatgccggtttct
attggctatttgaaccgtttcagaactgcaaaacaaaaaacggaaaccttaaaacaactc
gccgaaggaaaacttgatattgttattgggacacatcaattggtcaacaaaaatgtggtt
ttcaaagatcttggtttgttgattgttgatgaggaacagaaatttggggttaatgtaaaa
gacaaattaaaaacgatagcggccaatgtcgataccttgactttgacggcaacaccgatt
ccgagaacgttgcagttttcgttgatggcagcgcgtgatttatcggtgattacaacgcct
ccgcccaatcgttatcctatagaaaccaatgtagttgggtttaatgaagaactgattcgg
gatgcgatttcgtatgaaattcagcgcaacggacaggttttctttatcaataaccgaata
gaaaacatcaaggaaattgccggaatggttcagcgtttggttcctagcgcgcgcgtggga
attggacacggacaaatggatggcggtaaattggaagaattaatgctcgcctttatgaat
ggcgaatttgatgttttggtggcaacaacaatcatcgaaagtggtttggacgttccgaat
gcgaatactatttttatcaataatgccaataatttcggcttgtctgatttgcatcaaatg
agaggccgtgtgggtcgaagcaacaagaaagcgttttgttatttcatctgtccgccgtat
tcgcacatgaccgatgatgcccgaaaacgaatccaggcgttggaacaattcagcgaattg
ggaagcggtttgaacattgcgatgaaagatctggaaattcgtggtgcaggagatttattg
ggaggagaacaaagtggtttcatcaacgacataggttttgatacgtatcaaaaaatcatg
aacgaagccatcgaggaattgaaggaaaacgaatttaaggatttatatcccgaagaaaat
aatatcgagaccaaagaatatgtaaaagacctgcaaatcgacaccgattttgagttgttg
ttttcagatgaatatatcaataatgtcacggagcgtttgagtttgtacaacgaattggcc
gacgtgaaaaacgaagaagaactgattgtttttcaaaacaaactgattgaccgttttggc
ccaatgccaccaagagcacttgctttaatgaacagcatccgcatcaaatggattgccact
cgcgttggaattgaaaaattggtgatgaagaaaggcaagatgattggctattttgtttcc
gatcagcaatcggatttctatcattcaaaacgtttccataaagtaattcagtttgtgcaa
acgcatagtaatatttgtgtgatgaaggaaaaacaaactccagccggactgagactttta
ttgacttttgataatgttaagaatactaggacggctttggaatttatgcagttgttggga
ggggagtag
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