Flavobacterium gilvum: EM308_09460
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Entry
EM308_09460 CDS
T04609
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fgl
Flavobacterium gilvum
Pathway
fgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EM308_09460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgl03019
]
EM308_09460
03009 Ribosome biogenesis [BR:
fgl03009
]
EM308_09460
Enzymes [BR:
fgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EM308_09460
Messenger RNA biogenesis [BR:
fgl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EM308_09460
Ribosome biogenesis [BR:
fgl03009
]
Prokaryotic type
rRNA helicases
EM308_09460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOW09711
UniProt:
A0AAC9I5D8
LinkDB
All DBs
Position
complement(2257750..2259642)
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AA seq
630 aa
AA seq
DB search
MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP
LIQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREIK
RGAQIIVATPGRMQDMINRGLVNIKNIDYCVLDEADEMLNMGFYEDICSILSDTPDEKST
WLFSATMPAEVARIAKQFMSEPLEITVGTKNSGSATVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAIAEKLIEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERI
IKQKFEEKTIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINDVLEGLSKEELIKKM
VSVEFNRFIAYYKKNRDLSSQSSGSDRRERGDREPRENNNGGATRYFVNIGSRDNFDWMT
LKDYLKETLDLGRDDVFKVDVKEGFSFFNTDAEHTDKVMDILNNVQLEGRRINVEISKND
GGGRRDHNGRNSGGGFGGRSSAPRREGSFAPRREGGREGGFRSERGPRENSSSSRGERSS
APRREGSSDRAPRRSEGFGDSSRPRRPRRD
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgaatcgttactgaaggcgattttagatcta
ggatttgaaaatccgtcagaggtacaggaaaaggcgattcccctattattggaaaaagac
acagatatggttgcgttggctcagacagggacagggaaaacggcagctttcggttttcca
cttatccaaaaaattgatgccgacaacaggaatacacaagcattagttttatcgccaaca
cgcgaactttgtttacagattaccaacgaacttaaaaactactctaaatacgaaaaaggt
attaatgtggtagcagtttacggcggggctagtataacagaacaggctagagaaataaag
agaggagcacaaattattgtggctactccggggagaatgcaagacatgattaacagagga
ttggtaaacattaaaaacatagattattgtgttcttgatgaggctgacgaaatgttgaat
atgggattttatgaagatatctgctctattttatcagatactccagacgaaaaaagcaca
tggttgttctcagctacaatgcctgctgaagttgccagaattgcaaaacaattcatgtca
gaaccattagaaattaccgttggaactaaaaactcaggatcggcgacggtttctcacgag
ttttatttagtaaatgcacgtgatcgttacgaagcattgaaacgtttagccgatgccaat
ccggatattttctcagtagttttttgtagaacaaaacgtgatactcaggcaattgccgaa
aaattaattgaagacggatacaacgctgctgccttacacggagatttgtcccaagcgcaa
cgtgacggggttatgaaatcttttagaggtcgtcaaatccaaatgcttgttgctacagat
gttgccgctcgtggaatcgacgttgacaatgtaactcacgtagtaaactaccaattacca
gacgaaatcgaaacgtacaatcaccgttctggacgtacaggacgtgctgggaaactaggt
acttctatcgttattgtaaccaaaagtgaattgcgcaagatttcttctatcgaaagaatc
atcaaacaaaaattcgaagaaaaaacaattccatctggaatcgaaatctgcgaaatccaa
ttattgcacttagccaataaaattaaagataccgaagtagatcacgaaattgacaactac
ttaccggcgatcaatgatgtattggaaggtttgtcaaaagaagaattgatcaagaaaatg
gtatcggtagaattcaaccgttttattgcttactacaagaaaaacagagacctttcttct
caatcttctggttcagacagacgcgaaagaggcgacagagaacctagagaaaacaacaac
ggtggcgctacaagatactttgtaaacattggttcaagagacaattttgactggatgaca
ttaaaagattatctaaaagaaaccttagaccttggtcgtgacgatgtattcaaagtagat
gtaaaagaaggtttctctttcttcaacacagatgcagaacacactgacaaagtaatggat
atattgaacaacgtacaattagaaggacgtcgtatcaatgttgaaatctccaaaaatgac
ggtggtggaagacgcgaccataacggaagaaattctggtggtggttttggcggaagaagt
tcagctccaagaagagaaggaagctttgctccaagacgcgaaggtggacgtgaaggtggt
ttcagaagtgaaagaggtccaagagaaaactcttctagttcaagaggtgaaagaagttct
gctccaagaagagaaggttcttctgatagagctccaagacgttctgaaggctttggtgat
tcatcaagaccaagaagaccaagaagagattaa
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