Flavobacterium gilvum: EM308_11535
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Entry
EM308_11535 CDS
T04609
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fgl
Flavobacterium gilvum
Pathway
fgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EM308_11535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgl03019
]
EM308_11535
03400 DNA repair and recombination proteins [BR:
fgl03400
]
EM308_11535
Enzymes [BR:
fgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EM308_11535
Messenger RNA biogenesis [BR:
fgl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EM308_11535
DNA repair and recombination proteins [BR:
fgl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EM308_11535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HTH_40
RQC
HRDC
RecQ_Zn_bind
ResIII
Peripla_BP_4
Helicase_Sgs1
IF2_N
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AOW10085
UniProt:
A0AAC9I4S5
LinkDB
All DBs
Position
complement(2765003..2767114)
Genome browser
AA seq
703 aa
AA seq
DB search
MTSETLHAKLKENFGFEKFRPNQENVINSILCGKDTLAIMPTGGGKSICFQLPALLFPGI
TIVISPLIALMKDQVDSLKTNGIAACYINSSQTSDEQQLLIENLINQKLKLVYLAPESLQ
FLENVINQITVSLIAIDEAHCISAWGHDFRPAYTNLGYLKNRYPSTPILALTATADKATR
TDICEQLQLKDPNIFVSSFDRKNLSLEVRPALDRVKQIIDFIENKPNEAGIVYCLSRKTT
EELSEKLQKKGINAKAYHAGLDNKIRSKTQDGFINDDFQVVCATIAFGMGIDKSNVRWVI
HYNLPKNIEGYYQEIGRAGRDGLPSETVLFESYGDMIQLQNFASQGLNSEVQLAKLERMK
QYADALSCRRKILLSYFGELVSDNCGNCDICKNPPAFFDGTIIAQKGLSAISRLKETETL
PVIIDFLRGSKNASIYDKAYQNLKTYGVGVDISWYDWNQYLIQLINLGYCEIAFHQQNKI
KLTPFAKKVLFDGEKVKLTSIQKINNQPIESKTTKTKSSTNSLFEFLRKLRAEIAKEEEV
PAYVIFNDATLKQFEIHRPMSDNEFLAIDGVGKAKLEKYGDVFIKAIIEFQKIKKIRAKK
ENTTYKETLELFKLGMSVEEIATKRKLGIPTIISHLAKLYGDGHPINLRNFINEEEISKI
AEAKIKLKSPNALKPYFDFFEEQISYDKIRVGLTILEKENQIS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgacatcagaaactttacacgccaaactaaaagaaaattttgggtttgaaaaatttaga
cccaatcaggaaaatgttatcaattccattttatgtggaaaagatacgctggcaattatg
cctaccggaggcggaaaatcgatatgttttcaacttcctgccttactctttccgggaatc
acgatcgttatttcgccattaatcgccttgatgaaagatcaggttgacagtttgaaaacc
aatggaatagccgcttgttacatcaacagcagtcaaacttcagatgaacaacaacttctc
atcgaaaatttaatcaaccaaaaactcaaactggtttatcttgctccagaaagtttacaa
tttttagaaaatgtcattaatcagataactgtgagcttgattgctattgacgaggcacac
tgtatttcggcttggggtcacgacttccgaccggcatataccaatttgggatacctgaaa
aaccgctacccttctactcctatcctcgcattgactgcgactgccgacaaagcgacacgt
actgatatctgtgaacaactacaactaaaagatccaaatatttttgtatcgtcatttgac
agaaaaaatttgagtttggaagtcagacctgctttggatcgtgtcaaacaaattatagat
tttatagaaaacaaaccaaatgaagcgggtattgtttattgtttaagcagaaagacaacc
gaagaactctcagaaaaattacaaaaaaagggaattaatgccaaagcatatcatgcggga
ttagataataaaattcgttccaaaactcaggatggttttatcaatgatgattttcaagtg
gtttgtgccacaattgctttcggaatgggaatcgacaaatccaatgttcgttgggttatt
cattacaatttaccaaaaaacattgaaggttattatcaagagattggcagagcaggtcgt
gatggattaccatctgagacagttttgtttgaaagttatggtgatatgatacagttacaa
aattttgcttcgcaaggtttgaactccgaagtacaactagcaaagttggaaagaatgaaa
caatatgctgatgcgttgagttgtcgtagaaaaattttactttcctactttggcgaactg
gtttccgataattgcggaaactgtgatatttgcaaaaatccgccagcattttttgacgga
accattattgcccaaaaaggactttctgcgataagccgtctaaaagaaacagagacatta
ccagtaataattgattttttgagaggttctaaaaatgcttctatttacgacaaagcttat
caaaatttaaaaacttacggagttggtgtggatatttcatggtacgattggaatcaatat
cttatccaactaataaacttaggatattgcgaaattgctttccatcagcagaataaaata
aagttaaccccttttgctaaaaaagtactatttgatggcgaaaaagttaagctaactagc
attcaaaaaattaataatcaaccaattgaatccaaaactactaaaactaaatcatctaca
aactccctttttgaatttctacgaaaattacgagcagaaattgcaaaagaagaagaagtt
cctgcttatgtaatttttaatgacgcaacattaaaacagtttgaaattcacagaccaatg
agtgataacgaatttctagcaatagatggagttggaaaagctaaattggaaaaatatggc
gatgtttttataaaagctattattgaatttcaaaaaattaaaaaaataagggcaaaaaaa
gaaaatactacttataaagaaactctggaattatttaaacttggaatgtccgttgaagaa
attgctaccaaaagaaaattgggtattcctacaataatttcacatttagctaaattatac
ggtgatggtcatcctataaatttgagaaattttataaatgaagaagaaatatcaaaaatt
gcagaagcaaaaattaaactaaaatctccaaatgctttaaaaccgtattttgattttttt
gaagaacaaatttcatatgacaaaatcagagtcggtttaaccatcctcgaaaaagaaaat
caaatatcttaa
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