Fusobacterium gonidiaformans: C4N16_02475
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Entry
C4N16_02475 CDS
T05460
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
fgo
Fusobacterium gonidiaformans
Brite
KEGG Orthology (KO) [BR:
fgo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C4N16_02475 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fgo03021
]
C4N16_02475 (rpoD)
Transcription machinery [BR:
fgo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C4N16_02475 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
AVQ16468
LinkDB
All DBs
Position
449179..450489
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AA seq
436 aa
AA seq
DB search
MREFIKNEKVLSLIRKAMKEKVITYEEINDELKEDFPLEQIDKLISGMIEQGIEIKKKAS
LEKEKKEKTKKKTTKIETKEASKTVTKKRKKKEEEVEEVSKMKEEEEEFQDTDLSFEEIP
EEENLEDLLEKEEDFDASELEEIPEEELTNEELAELSNGMKVDEPIKMYLREIGQIPLLT
HKEELELAKKALEGDEFANKRLIEANLRLVVSIAKKHTNRGLKLLDLIQEGNIGLMKAVE
KFEYTKGYKFSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKIKKEARIYLQETGKD
ATPEILAERLGMEVEKVKSIQEMNQDPISLETPVGSEEDSELGDFVEDQKMLTPYELTNR
SLLREQLDSVLGSLSSREEKVLRYRYGLDDGSPKTLEEVGKIFKVTRERIRQIEVKALRK
LRHPSRRKKLEDFKVE
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgagggagtttataaaaaatgaaaaggttctttctctaattcgaaaagcaatgaaagag
aaagtaatcacatatgaagaaattaatgatgaactcaaagaagattttcctttggaacaa
atcgataaattgatcagcggtatgatagagcaaggaatcgaaatcaaaaaaaaggcttcc
ttagaaaaagaaaaaaaagagaaaacaaagaaaaaaactacaaaaatagagacaaaagaa
gcttctaaaacagtgactaagaaaagaaagaaaaaagaagaagaagtagaagaagtttct
aaaatgaaggaagaggaagaagagttccaagataccgatttatcttttgaggaaattcca
gaagaagaaaatttagaagatttattagaaaaagaagaagatttcgacgcaagtgagttg
gaagaaattccagaagaagaattaacgaacgaagagttggctgaattatcgaatgggatg
aaggttgatgagccaatcaaaatgtatttaagagaaatcggtcaaattcctttactgact
cataaagaagaattggaattagcgaagaaagcattagagggagatgagtttgctaataaa
cgtttgattgaagcaaatttaagattagtggttagtattgccaaaaaacatacaaataga
ggattgaagttattagatttgatccaagaaggaaatatcggtttgatgaaggcagtcgaa
aagtttgaatatacgaaaggatataagttttctacttatgcaacttggtggattcgtcag
gcaattacaagagctattgcagatcaaggaagaacaattcgtattccggttcatatgata
gaaaccatcaataagattaaaaaagaagctagaatttatttgcaagaaacaggaaaagat
gcaactcctgaaattttagccgaaagattgggaatggaagtggaaaaggtaaaatccatt
caagagatgaaccaagatccaatttctttggaaactccggtaggaagtgaagaagatagt
gagttgggtgattttgtagaagaccaaaagatgttaaccccatatgaattaacgaatcgt
tctctactacgagagcaattagatagtgtgttgggaagtttaagtagccgagaagaaaaa
gtattgaggtatcgttatggattagatgatggttctccaaaaactttggaagaagtaggg
aaaatttttaaggttacgagagaaagaattcgtcaaattgaagtgaaagctttaagaaaa
ttaagacatccaagtagaagaaaaaaattagaagattttaaagtagaataa
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