Fusobacterium gonidiaformans: C4N16_03765
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Entry
C4N16_03765 CDS
T05460
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fgo
Fusobacterium gonidiaformans
Pathway
fgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4N16_03765 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgo03019
]
C4N16_03765 (rny)
Messenger RNA biogenesis [BR:
fgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C4N16_03765 (rny)
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Ortholog
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GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_NusA_2nd
KH_KhpA-B
ATP-synt_B
KH-I_KHDC4-BBP
Exonuc_VII_L
DUF4407
Motif
Other DBs
NCBI-ProteinID:
AVQ16702
LinkDB
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Position
698568..700133
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AA seq
521 aa
AA seq
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MNLILGIGLGVFGLAIAFALIYKKMVIDKQIQTLNNLEDEVAKSKIKAKEILESAEKEAV
SKGKEIELKAKERAYSLKEEAEKEIRNSKNEILQKEARLAKKEETLDHKIEKLENKSQEL
EKTTEELEQKREEIETVKKEQEAELERITGLTKAEAKDILIAKLKEELTHDNALAIREFE
NKLEDEKDRISRRILSTAIGKAAADYVADATVSVVNLPSDEMKGRIIGREGRNIRSIEAL
TGVDIIIDDTPEAVVLSSFDGVKREIARITIEKLITDGRIHPGKIEEVVNKAKKEVEKEV
VAAGEEAILELSIPGLHPDIIKTLGRLKYRTSYGQNVLVHSIEVAKIAATLAAEIGADVE
LAKRAGLLHDIGKVLEHDVESSHAIIGGEYLKKYGEKATIINAVMAHHNEVEFETIEAIL
VQAADAVSASRPGARRETLTAYIKRLEQLEEIANSFQGVESSFAIQAGRELRMIINPDRV
NDDEATVMSREVAKKIEETMQYPGQIKVTIVRETRAVDYAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaatattgggaattggcttaggtgtttttggtttagccatcgcctttgctttg
atatataaaaaaatggttattgataaacaaattcaaacattgaataaccttgaggatgaa
gtagcaaaatcaaaaattaaagcaaaagaaattttagaaagtgcagaaaaagaagcagtt
tctaaaggaaaagaaattgaattaaaagcaaaagagagagcgtattctttaaaagaagaa
gcagaaaaggaaatacgaaattcaaagaatgagattttacaaaaagaagctagattggca
aagaaagaagaaactttagaccataaaattgagaaattggaaaataaaagtcaagaatta
gaaaagacaacagaagagttagaacaaaaaagagaagaaattgaaacagtaaaaaaagaa
caagaagcagaattggaaagaatcacaggattgacaaaagcagaagcaaaggatatttta
attgcaaaattaaaagaagaactaacacatgataatgctttagccattcgtgaatttgaa
aataaattagaagatgaaaaagatagaattagtagaagaattttatcgacagcgattgga
aaagcagcagccgattatgtggcggatgcgactgtttccgtggtaaacttaccaagcgat
gaaatgaaaggaagaattatcggaagagagggacgaaatattcgttctattgaggcttta
acaggagtcgatattattattgatgatactccggaagcagtagttctttccagttttgat
ggagtaaagagagaaattgcaagaattacgattgaaaaattgattacggatggaagaatt
catccaggaaaaattgaggaagtcgtgaataaagcgaagaaagaagtagaaaaagaagta
gtagcggctggggaagaagctattttagaattatctattccaggactacatccagatatt
attaaaacattaggaagattaaaatacagaacaagttatggacaaaatgtattagtacat
tctattgaagtggcaaaaattgctgcaactttagcagccgaaataggagcagatgtagag
ctagcaaaaagagccggattactacatgacattggaaaagtattggaacacgacgtagaa
tcttctcatgctatcattggtggagaatatttaaagaaatatggagaaaaagcaaccatt
atcaatgctgtcatggctcaccataatgaagtagaatttgagacaatagaagctatcttg
gtacaagcagcagatgctgtttctgcttcaagacctggagcaagaagagaaactttgaca
gcttacattaaacgattggaacaattagaagaaattgcgaattctttccaaggagtagaa
tcttcttttgcaattcaagctggaagagaattacgaatgattatcaatcctgatagggta
aacgatgatgaagcaacagtaatgtcaagagaagtggcgaaaaaaatagaagaaacaatg
caatatccaggtcaaattaaagttacaattgtacgagaaactcgtgctgtggattatgca
aaatag
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