Fusobacterium gonidiaformans: C4N16_04495
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Entry
C4N16_04495 CDS
T05460
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fgo
Fusobacterium gonidiaformans
Pathway
fgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4N16_04495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgo03019
]
C4N16_04495
03009 Ribosome biogenesis [BR:
fgo03009
]
C4N16_04495
Enzymes [BR:
fgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4N16_04495
Messenger RNA biogenesis [BR:
fgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4N16_04495
Ribosome biogenesis [BR:
fgo03009
]
Prokaryotic type
rRNA helicases
C4N16_04495
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_22
NDK
2H-SAK
Motif
Other DBs
NCBI-ProteinID:
AVQ16832
LinkDB
All DBs
Position
851739..853325
Genome browser
AA seq
528 aa
AA seq
DB search
MEKKETLKEFRELGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKT
AAFALPILENIEHQDKIQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQR
KLLRNGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNE
DKRMLFFSATMPNEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCRI
IDLAEDFYGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINIL
VATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQ
IQKIVKTEIRKEEVPEVKDVIQAKKFQIQKDIDEILGEGEYDKFKKLAQDLLKKEEAENI
VASLLKLAYEDVLDESNYNEISSTKSVGGGKARLFVALGRKDGMTAKKLVEKVMKVAKVQ
DKKIRNVEVYEAFSFITVPFKEAEIIIDSFKARQKGKKPLIEKAKSQK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaaagaaacattaaaggagtttagagaattaggtattggggaaaaattatta
aaggctttatctaagaaaggatatgaaactcctactccgattcaaagtttaacaattcca
gcattgttaacaggcgaaaaggatattattggtcaagcacaaacaggaacaggaaaaaca
gcagcttttgctcttcctattttagagaatatagaacatcaagataaaattcaagggatt
gtattgactccaacaagagaattagctttgcaagttgccgaagaaatgaatagtttagga
agttctaaaaaaattaaaattattccggtatatggaggacaatctattgatatacaaaga
aaattacttcgaaatggagcggatattattgtaggaactcccggaagagtgattgatttc
attgagagaaaatttttaagattacaagatttaaaatattttattttggatgaagcagat
gaaatgttaaatatgggattcttagaagaggttgaaaagattttagaagcaacgaatgaa
gataaaagaatgttgtttttctcagcaaccatgccgaacgaaattttaaaagtagctaaa
aaacatatgaaggactatgaaattttagctgtgaaagcaagagaattgactacggatttg
accgatcaaatttattttgaagtcaatgaaagagacaaatttgaagctctatgtagaatt
attgatttagcagaagatttttatggaattgtattctgtcgaacaaaaacagatgtcaac
gaagttgttggaagattaaatgatagaggatatgatgcagaaggattgcatggagatatt
ggacaaaactatcgtgaagtaactttaaagagatttaaggctaaaaaaatcaatatttta
gtggcaacagatgtagcagctcgtggaattgatgtgaatgatttaagtcatgttatcaac
tatgcgattcctcaagaagcggaaagttatgttcatagaattggaagaacgggaagagca
gggaaagaaggaacagcgattacctttattacacctcaagaatatcgaagattattacaa
attcaaaaaattgtaaagacagaaattcgaaaagaagaagtacccgaagtgaaagatgtc
attcaagcgaaaaaatttcaaattcaaaaggatattgatgaaattttaggagaaggagaa
tacgataaatttaaaaaattagctcaagatttgttaaaaaaagaagaagcagagaatatc
gtagcatcgctactaaaacttgcctatgaagatgttttagatgaaagcaactacaatgaa
atttcatctacgaaatcagtaggtggaggaaaggcaagattgtttgtagctttgggaaga
aaagatggcatgacagcgaagaaattggtagaaaaagttatgaaagtagcgaaggtgcaa
gataaaaaaattcgaaatgtagaagtatatgaagccttctctttcattacagtaccattt
aaagaagcggaaatcattattgatagctttaaggcaagacaaaaaggaaaaaaaccactc
attgaaaaagcaaaatcacaaaaataa
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