Fusobacterium gonidiaformans: C4N16_04970
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Entry
C4N16_04970 CDS
T05460
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fgo
Fusobacterium gonidiaformans
Pathway
fgo03420
Nucleotide excision repair
fgo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4N16_04970
03430 Mismatch repair
C4N16_04970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fgo03400
]
C4N16_04970
Enzymes [BR:
fgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4N16_04970
DNA repair and recombination proteins [BR:
fgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C4N16_04970
MMR (mismatch excision repair)
Other MMR factors
C4N16_04970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
UvrD_C
AAA_19
Cas_Cas4
UvrD_C_2
AAA_11
Dna2
AAA_22
AAA_12
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
AVQ16917
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All DBs
Position
958577..961282
Genome browser
AA seq
901 aa
AA seq
DB search
MLDKNQQRVVEHTEGPLLVIAGPGSGKTKTLVERSVYLISEKKVNPSQILLSTFTEKAAR
ELRMRIQKALQKKNLSVSIEEMYLGTMHSIWLRILEEYIEYSHYENGIEILDEEEEKFFL
YSQLRQFKNLNFYGEFFEREHSYGDWAQSRLLQTIFAKIQEEAVDISSIRSYQEEIQFLK
EAYLLYQNLLRKENKMSFSAIQMELYHSLLEYSEFLEKVQTKIHYVMIDEYQDSNPIQEK
IILLLSGKYKNICVVGDEDQAIYRFRGATVENILRFPQVFEEDCETVYLEKNYRSSEEIV
HLCNQWMNRVDWQGERFDKHSYSARYDTIERKSVFRISGSSNSRKRNELITWLKELKERK
KIEDYSQIVFLFDNFRSPQVKRLEEDLEMAGIPVYCPRARNFFSREEVKLFFGVFMVLSP
KIQESVKGYSYYEECLFRVRRLAKDDKDLQKWILEQREKEIGDFLEIYYQILSFSPFREI
LEKQEEDVRRGREIYNLSLIGNILQSFQKLCKIKEDSKVERLEYLEYFFQSYLKKFIEKG
VNEFEKKGEFPKGCIPFLTIHQSKGLEFSIVVLSSLYQNPPVYREKIRKSYDSLFQKKKL
LQEHNEELYDFYRKFYVAFSRAKNALIFLEDNVSSSFQAFVRHSVDIVSSDFHWEDIPEE
EYNSAEEMQTYSYTTDIASYDLCPRRYFFLRKISFPSLERENMIFGTLLHRCLERLHKYP
DKIISLEEMIGKEKEKLEKKSKFFFQEKDIKMVYKILQEYQGKAVNLYDEILQAEGKEFL
EWQGNMIYGEIDLLALQENQWKIIDFKTGKENPSYIEQLVLYQNLLRKYGKEKEIRLSLY
YLLEQREEKIELSLKEEVAILEKIQRTIENIQKKEFTKREYQKEICDTCEFFSFCYRKET
L
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
gtgttagataaaaatcaacaaagagtagtggaacatacggaaggacctttgttagtaata
gcaggtcccggttcgggaaaaacaaaaactttagtggagcgtagtgtgtatttaatatct
gaaaaaaaggtgaatccttctcagattttactaagcacttttacagaaaaggcagcaaga
gagttacggatgagaattcagaaagctttgcaaaaaaagaatctttctgtttctattgag
gaaatgtacttaggaacgatgcactctatttggcttcgaatattggaagaatatattgag
tattctcactatgaaaatggaatagaaattttggatgaggaagaagaaaagttcttcctc
tattcgcaattacgacaatttaaaaacttaaatttttatggggaattttttgagagagag
catagttatggagattgggctcaaagtcgtctattgcaaactatttttgcaaaaattcaa
gaagaggcagtagatatcagctctattcgtagctatcaagaagaaatccaatttctgaaa
gaggcatatttactttatcaaaatctattgagaaaagaaaataaaatgagtttttcggcg
attcaaatggagctttatcattctttgttagagtattcggaatttttggagaaagtacaa
actaaaatacactatgttatgatagatgagtatcaagatagtaatccgattcaagagaaa
attattctcctactttcaggaaaatataaaaatatttgtgtcgtaggggatgaggatcaa
gctatttatcgatttcgtggggctacggtagaaaatatcttacgttttccacaagttttt
gaagaggattgtgagaccgtctacttagaaaaaaattatcgttctagtgaagaaattgtt
catctttgcaatcaatggatgaatcgagtcgattggcagggagaacgttttgataagcat
agttactctgctcgttacgatactattgagagaaagtctgtttttcgtatttccggttct
tcaaattctagaaagagaaatgagttaattacttggctcaaagagttaaaagaaagaaag
aaaatcgaggattatagccaaattgtctttttatttgataattttcgttctcctcaggta
aaacgtttagaagaagatttagagatggcaggaattcctgtgtattgtccaagagcaagg
aattttttttccagagaggaagtcaaattgttttttggggtttttatggttttatctcct
aaaatacaagaatcagtaaaaggatactcttattatgaggaatgcttgtttcgagtaaga
agattggcaaaggatgacaaagacttacaaaaatggattttagagcagagagaaaaagaa
attggagattttttagaaatttattaccaaattttatctttttctcccttccgagaaatt
ttagaaaagcaggaagaagatgttcgaagaggaagagaaatttataatctcagtttaatt
ggaaatattctgcaatcctttcaaaaactatgtaaaattaaagaagacagtaaagtggaa
cgattggaatatttggaatatttctttcaaagttatttgaaaaaatttattgaaaaaggt
gtgaatgagtttgaaaaaaaaggagagtttccaaaaggttgtattccatttttaacaata
caccaatcaaaaggcttagagttctctattgttgtattgtcttcgttgtatcaaaatcca
cctgtctaccgagaaaaaattagaaaatcctatgatagcttgtttcaaaagaaaaaatta
ttacaagagcataatgaagaattatatgatttttatcgaaaattttatgttgctttttca
agagcaaagaatgctctcatttttttagaagataatgtgagtagtagttttcaagctttc
gtgcgtcattctgtggatattgtttcttccgactttcattgggaagatattccggaagag
gaatacaatagtgcagaagaaatgcagacatactcctatacaacggacattgcttcctat
gatttgtgtccaaggagatattttttcctacggaaaatttcttttcccagtttggaaaga
gaaaatatgatttttggaactttattacatcgttgcttagaaaggctccataaatatccg
gataagataatttctttggaagaaatgattggaaaggaaaaagaaaagctggagaagaaa
tcaaaatttttcttccaggaaaaagatataaaaatggtttacaaaattttacaggaatat
caagggaaagcagtgaatttatacgatgaaattttacaggctgagggaaaagaatttttg
gagtggcaaggaaatatgatttatggagaaattgatttattggcccttcaagagaatcag
tggaaaattatcgattttaaaacaggaaaggaaaatccttcctatatagagcagcttgta
ttgtatcaaaatttattaagaaaatatggaaaagagaaagaaattcgactctctctttat
tatttattagagcaaagagaagaaaaaatagagctttctttaaaagaagaggtagcaata
ttagagaaaattcaaagaacgattgaaaatattcaaaagaaagaatttacaaagagagaa
tatcaaaaagaaatttgcgatacctgtgaatttttttctttttgttatcgaaaggaaaca
ttatga
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