Fusobacterium gonidiaformans: C4N16_05540
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Entry
C4N16_05540 CDS
T05460
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fgo
Fusobacterium gonidiaformans
Pathway
fgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4N16_05540 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgo03019
]
C4N16_05540 (pnp)
03016 Transfer RNA biogenesis [BR:
fgo03016
]
C4N16_05540 (pnp)
Enzymes [BR:
fgo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
C4N16_05540 (pnp)
Messenger RNA biogenesis [BR:
fgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C4N16_05540 (pnp)
Transfer RNA biogenesis [BR:
fgo03016
]
Prokaryotic type
tRNA degradation factors
C4N16_05540 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
KH-I_KHDC4-BBP
KH_NusA_2nd
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AVQ17021
LinkDB
All DBs
Position
1082996..1085119
Genome browser
AA seq
707 aa
AA seq
DB search
MFDEKTLEMELAGRTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLT
VDYIEKFYAAGKFPGGFNKRESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSF
DEQNTPDYLGIIGSSLALSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEQSLLDLSVA
GTKDAVNMVEAGAKELDEETMLKAILFAHDNIKKICAFQEEFVKLCGKEKITFEKEEVDT
VISSFIEENGHERLQAAVLTLGKKNREEAVDGLEEELLSAFIEKQYPDVAEEEIPEEPIL
AFKKYYHDLMKKLVREAILYKKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL
ATATLGTKDDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAERAL
RYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGLIKE
GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALSQAHVARQ
QILEVMNAAISSPADLKPNVPRIQQITIPKDKIAILIGPGGKNIKGIIEETGSTIDITDD
GKVSIFSKDLEVLENTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGLLHIS
EISKERVANVEDVIKMGDVFKVKVISLDNGKIALSKKKLEMENTVAE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgaaaaaacattagaaatggaactggcaggaagaaccctaaaggtttcaact
ggaaaaattgcaagacaatcttgtggtgctgttatgattcaatatggagatactgtatta
ttatctacagtaaatagaagtaaagaaccaagaaagggagcagatttctttcctttaaca
gttgattatattgaaaaattttatgcagcaggaaaatttcctggaggatttaacaaaaga
gaaagcagaccatcaacagatgctactttggttgctcgtttgattgacagaccaattcga
ccaatgtttccagaaggatttacttatgatgtacatattgtcaatacagtgttttctttt
gatgaacaaaatacacctgattatttaggaattattggttcttctttggcattaagtatt
tcagatattccattcttaggaccggtagccggggtaaccgtaggatatattgatggagaa
ttcattttaaatccaagtccggaacaattagagcaaagtctattagacttatctgtggca
ggaacaaaagatgcagtcaacatggtagaagcaggagcaaaagaactagatgaagaaact
atgctaaaagcaattttatttgctcatgacaatatcaagaaaatttgtgccttccaagaa
gaatttgtaaaactttgtggaaaagaaaaaattacttttgaaaaggaagaagtggatact
gtaatttcttctttcattgaagaaaatggacatgaaagattacaagcagcagtattgact
ctaggaaagaaaaatagagaagaagcggtagatggtttagaagaagaattattgagtgct
tttattgaaaaacaatatcctgatgttgctgaagaggaaataccggaagaaccaatttta
gcatttaaaaaatattaccatgacttaatgaaaaaattagttcgagaagctattttgtat
aaaaaacatagagtagacggaagaacaacaacagaaatcagaccattggatgctcaaatc
aatgtattaccaattccacatgggtctgcattgttcacaagaggagaaactcaatctctt
gcaactgcaaccttaggaacaaaagatgatgagcaattggtggataatttagaaaaagaa
tactataagaaattctacttacactataatttcccaccatattctgtaggagaaacagga
agaatgggagctcctggaagaagagaattaggacatggatctttagcggaaagagctttg
cgttatgtcattccgacagaagaagaattcccatacacaattcgagtggtttctgatatt
acagaatcaaatggatcttcatcacaagcttctatttgtggaggttctttagcattgatg
tctgcaggagttcctattaaagaacatgtagcaggaattgctatgggacttattaaagaa
ggagaagaattcactgttttaacagatattatgggattggaagatcatttaggagatatg
gacttcaaggtagccggaacaaaatctggaattactgctttacaaatggatattaaaatt
acaggaattacagaagaaattatgagaattgctttaagtcaagctcatgtcgcaagacaa
caaattttagaagtgatgaatgcagccatttcaagtccggcagatttaaaaccaaatgtt
ccaagaattcaacaaattacaattccaaaagataaaattgctattttaattggacctggt
ggaaaaaatattaaaggaattattgaagaaacaggatctacgattgatattacagacgat
ggaaaagtttctattttctcaaaagatttagaggtattagaaaatactttacgattggta
aataactacgtgaaagatgtagaactaaatgaagtatacgaaggaaaagtagttggaatt
caaaaatttggagctttcatggaaattttaccaggaaaagaaggattattacatatttct
gaaatctcaaaagaaagagtagcgaatgtagaagatgtcattaaaatgggagatgtcttc
aaagtaaaagtaatttctctagataacggaaagattgctttaagtaagaaaaaattagag
atggaaaacacagtagcagagtag
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