Fusobacterium gonidiaformans: C4N16_06730
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Entry
C4N16_06730 CDS
T05460
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fgo
Fusobacterium gonidiaformans
Pathway
fgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4N16_06730 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgo03019
]
C4N16_06730 (recQ)
03400 DNA repair and recombination proteins [BR:
fgo03400
]
C4N16_06730 (recQ)
Enzymes [BR:
fgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4N16_06730 (recQ)
Messenger RNA biogenesis [BR:
fgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4N16_06730 (recQ)
DNA repair and recombination proteins [BR:
fgo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C4N16_06730 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
AVQ17245
LinkDB
All DBs
Position
complement(1335179..1336960)
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AA seq
593 aa
AA seq
DB search
MEKEAKRLLQEIYGYRDFRKGQKAILESVFQGREVLGILTTGGGKSICYQIPALLFEGLT
LVISPLISLMKDQVDTLKMIGVKSAFLNSTLKKEEYRRLVGKIFRGEIKILYVAPERLCN
ESFISLMQKIKISLLAVDEAHCISQWGHDFRKSYLEIPTFLKKLRQKVQILALTATATPR
VQEDILDKLHIPDAYIYQGSFNRKNLYFRVERRKVPEAYVADYLKKSQGESGIVYCSTRK
SVDSMYSYLKEIRGYSVGKYHGGMEKEEREESQNNFLMDKIQVMVATNAFGMGIDKSNVR
FVIHANLPGDLESYYQEAGRAGRDGGRAEAILLYQEEDISTQRFFIEKNEEIDEDFKREK
LHKLDKMIEYAELESCYREFILSYFGEARVKNYCGFCGNCRKQTDVQDLSVEAQKVLSCI
GRAKESIGQSTVTNILLGKADSKMKLKGLDRLSTFGIMEKKEIPWLEDFIHYLLSEGYIS
QTAGSFPVLKLNTQSWDILQNRRKVLRKEEEEVRFSMQRNPLFRKLLRLRLEISEREKVA
PYIIFSDLTLWEFAQFRPKTKYEMMKIQGVGNQKFTHYGEEFLHCILEEEELR
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcaaaaagattgttacaagaaatatatggatacagagattttagaaaa
ggtcagaaagcaattttagaatccgtttttcagggaagagaagttttaggaatcttaaca
acaggtggaggtaagtcaatctgttatcaaattccggctcttttatttgaaggattgact
ttagtcatatctcccttgatttctttgatgaaggatcaagtggatactttaaaaatgata
ggggtaaaatcagcttttttaaattcaactttaaagaaagaagagtatcggcgattagtc
ggaaaaatttttcgaggagaaattaaaatcctctatgtcgctcctgaaagactttgtaat
gaaagttttatttccctcatgcaaaagataaaaatttctttgttagcagttgatgaggct
cactgtatttctcaatgggggcatgattttcgaaagtcttatttggagattcctactttt
ttaaaaaaattaagacaaaaagtacaaattttagctttgacagctacagcaactcctaga
gtacaagaagatattttagataagttacatattcctgatgcttatatttatcagggaagt
tttaatcgaaaaaacttatattttcgtgtggagagacgaaaagttcccgaagcttatgta
gcagattacttaaaaaaatctcagggagagtccggaattgtgtattgttctactagaaaa
tcagtagatagtatgtatagttatttaaaagaaatccgaggatattctgtcggaaaatac
catggtggaatggaaaaggaagaaagagaagaaagtcaaaataattttttaatggataag
atacaggtgatggtggcaaccaatgcttttggaatgggaattgataagtccaatgttcgt
tttgtgatacatgcaaatttaccgggagatttggaaagttattaccaagaagcaggaaga
gcaggaagagatggaggaagagcagaagcgattttgttgtatcaggaagaagatatttcc
acacagagattttttatcgaaaaaaatgaggaaattgatgaagattttaaaagagaaaaa
ttacataaattagataagatgatagaatatgcggaattggaatcttgctatcgagaattt
attttgtcctattttggagaagcaagagttaaaaattattgtggtttttgtgggaattgt
agaaaacaaacagatgtacaggatttgagtgtggaggcacaaaaagttctttcttgcatt
ggaagagcaaaagaaagtattggacaatcgacagtaacgaatattttattgggaaaagcc
gatagtaagatgaagttgaaagggttagaccgattatcaacttttggaattatggagaaa
aaagaaattccttggttggaggactttatccattatttattatccgaagggtatatttct
caaacagcaggaagttttcctgtcttaaaattaaatacacagagttgggacattttacaa
aatagaagaaaagttcttagaaaagaagaagaagaggtacgcttttcaatgcaaagaaat
cctttatttcgaaaattacttcgtttgcgattggaaatttccgaaagagagaaggtggca
ccttatattattttttcagatttaaccttgtgggagtttgctcaatttcgtcctaagaca
aaatatgagatgatgaaaatacaaggagtcggaaatcagaaattcactcattatggagag
gaatttttacattgtattttagaagaagaggagttaagatga
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