Fusarium graminearum: FGSG_00819
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Entry
FGSG_00819 CDS
T01038
Name
(RefSeq) endoribonuclease YSH1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
fgr
Fusarium graminearum
Pathway
fgr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fgr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
FGSG_00819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fgr03021
]
FGSG_00819
03019 Messenger RNA biogenesis [BR:
fgr03019
]
FGSG_00819
Transcription machinery [BR:
fgr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
FGSG_00819
Messenger RNA biogenesis [BR:
fgr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
FGSG_00819
U7-dependent histone pre-mRNA processing factors
FGSG_00819
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
23548291
NCBI-ProteinID:
XP_011316533
UniProt:
Q4IPN9
LinkDB
All DBs
Position
1:complement(<2657063..>2659995)
Genome browser
AA seq
833 aa
AA seq
DB search
MASKRKAAAMNAAAAEEPVDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAY
DGLAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLI
QDSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAM
FLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALM
KSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHADFQKYPIYYASNLARKCMLIYQ
TYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKYIRSLKNLDRFDDVGGCVMLASP
GMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRSMAGARRMP
GGDGEKVLIPRRCSVQEYSFAAHVDGVENREFIEEVQAPVVILVHGEQHNMMRLKSKLLS
LNANKTAKVKVYSPRNCEELRIPFKADKIAKVVGKLACIQPPQSIHPDQTATPPLVTGVL
VQNDFKLSLMAPEDLREYAGLNTTTITCKQRLTLSAAGVDLVKWALEGTFGNIEELPEMR
RAKNGQNGHADKMITDGDDESKQEDADEEVASLVAAYLVMGCVSVRYRTNGEVELEWEGN
MLNDGIADSVMAVLFSVESSPAAVKRSSAKHSHSHDLPEVNPHHSATPEERLERLLWFLE
AQFGQDNVAPVTTPKLPPLEDVDDKNKNEGEDEDAMKTDEDGEDAQLQERQQKEIERLHK
IGIPVPGVSIKVDKMSATVWLEDLEVESSHKVFADRVRAVVERAIEVTAPLWG
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcatccaaacgaaaagctgccgctatgaacgcggccgcggccgaagaaccagtagat
ccgtcagatgagctcatgtttctttgcctaggaggaggaaacgaagtcggaaggtcatgc
cacattattcaatacaaaggaaagacggtcatgcttgatgccggtcaacatcctgcatat
gatggactcgccgcattgcctttctacgacgactttgatttgagcactgtcgacgtgctc
ctcatcagccatttccatattgaccatgcggcatcattaccatacgtcctcgccaagacc
aacttcagggggcgcgtcttcatgacacatcctaccaaagctatctacaaatggcttatc
caggacagtgtccgagttggcaacacctcgtccaacccaaccacacagcctgtttacact
gagcaagaccatttaaatacctttcctcagatcgaggccatcgactatcacaccacgcac
accatctcctccatcagaattaccccttatccagccggccatgtcctcggtgccgccatg
tttctcatcgagattgctggtctcaacatcttcttcacaggtgactactcgcgtgaacaa
gatcgacatcttgtctcggcagaagttcccaagggtgtcaaaattgacgttctcatcacg
gagtccacgtatggtattgcatctcatgttcctcgtctggaaagagagcaggccctcatg
aagtcgattacaagtattctcaacagaggcggtcgagtgctcatgccagtatttgctttg
ggacgagcccaagagctgcttttgattctggacgagtactgggggaagcatgccgatttc
cagaagtaccctatttattatgcaagtaatcttgcgaggaaatgtatgctcatctaccag
acatatgtcggtgccatgaacgacaacatcaagcgtctcttccgtgagcgcatggctgag
gctgaggcatccggtgatggtgcgggcaagggaggaccgtgggattttaagtacatccgc
tcgctcaaaaacttggacaggttcgacgatgtaggcggctgcgtcatgcttgccagccct
ggtatgcttcagaacggtgtcagtcgtgaactactagaaagatgggcgcccagcgagaag
aacggcgttattattactggttacagtgtcgaaggcacaatggccaagcagatcatgcag
gagcccgaccaaatccaggctgtcatgtctcgtagtatggctggtgcccggcgtatgccc
ggtggcgatggtgagaaggttcttattcctcgacgatgcagtgtccaggagtactcattc
gctgctcacgttgatggcgtcgaaaaccgcgagtttatcgaggaggttcaagcgccagtt
gttattcttgtccatggagagcagcacaatatgatgcgtctgaagtccaaacttctgtca
ctcaatgccaataaaaccgcgaaagtcaaggtttactctcctcgcaactgtgaggaacta
cgcatccccttcaaagccgacaaaatagccaaggttgtaggaaagctcgcctgtattcag
cctcctcagagcattcaccccgaccagactgctacgcctcctcttgtcaccggcgtgctt
gtgcagaatgatttcaaactgtctctcatggcacctgaggacctccgtgagtacgcaggt
ctcaacactactaccatcacgtgtaaacagcgcctcaccctcagtgctgcgggtgttgat
cttgtcaagtgggctcttgagggcacctttggcaatattgaagagcttcctgaaatgcgt
cgtgcaaagaatggccagaacggacatgccgacaagatgattacggatggcgacgacgaa
tcgaagcaagaggatgcagatgaagaggttgccagccttgttgcagcttacctggtcatg
ggttgtgtttcagttcgatatcgaacgaatggtgaagttgagcttgaatgggagggcaac
atgctcaacgatggcatcgccgactccgtaatggcggttctcttctctgttgagagctct
cctgccgccgtcaagcgctcatccgcgaagcactcacactcacacgaccttccagaagtg
aaccctcaccattccgccactcctgaggaacgtctcgagcgtctcctgtggttccttgaa
gcccagttcggccaagacaatgtcgctcctgtcactacccctaagctacctcctctggaa
gatgttgatgataagaacaagaacgaaggtgaagacgaagacgcgatgaagacagatgag
gatggcgaggacgcgcaactccaggagagacagcaaaaggaaatcgagcgattgcataag
attggcattccggttcctggagtatcaatcaaagttgataagatgtctgccacagtatgg
ctggaggatctcgaggtcgagtctagccataaggtatttgctgaccgagtgagagctgtt
gtggagagggctatcgaggtgacagcacctctctggggttaa
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