Fusarium graminearum: FGSG_01656
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Entry
FGSG_01656 CDS
T01038
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
fgr
Fusarium graminearum
Pathway
fgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGSG_01656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgr03019
]
FGSG_01656
03041 Spliceosome [BR:
fgr03041
]
FGSG_01656
03009 Ribosome biogenesis [BR:
fgr03009
]
FGSG_01656
03016 Transfer RNA biogenesis [BR:
fgr03016
]
FGSG_01656
Enzymes [BR:
fgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FGSG_01656
Messenger RNA biogenesis [BR:
fgr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
FGSG_01656
Spliceosome [BR:
fgr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
FGSG_01656
Complex C
U4/U6.U5 tri-SnRNP related factors
FGSG_01656
Ribosome biogenesis [BR:
fgr03009
]
Eukaryotic type
Pre-60S particles
Helicases
FGSG_01656
Transfer RNA biogenesis [BR:
fgr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
FGSG_01656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Helicase_dom4_arc
DUF5688
Glyco_hydro_65C
Motif
Other DBs
NCBI-GeneID:
23549086
NCBI-ProteinID:
XP_011317481
UniProt:
I1RDG0
LinkDB
All DBs
Position
1:5506632..5509965
Genome browser
AA seq
1094 aa
AA seq
DB search
MDELFDVFEGNVEAPSASEDESRQNRKGDKTKKRKANAINGKHGDADKSEDVDMDNNTTE
ESKDEASSDDESSEESASQQDAKRRKKEEAVGPVITDTFQTAESREVAGAATFTEQDSSL
VLSHNIQHQVALPPDLDYEYVPLSEHKAPEQPARTWNFKLDPFQSLSVASIEREESILVS
AHTSAGKTVVAEYAVAQCLKRNQRVIYTSPIKALSNQKYRDFEAIFGDVGLMTGDVTINP
TASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRYV
FLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFFPAGGSGARLIVDEKSNFNE
QNFNKVMQEVEEKKGADPNDPNARQKGKGKNKKTNKGGADNGSDIAKIIRMTIKKKFNPV
IVFNFSKRECENMAMNISSLSFNDDSEKAMVRKVFHNAIESLSEQDRELPQIINLLPLLE
RGIGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKR
RPLTSSEYIQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSAFYLGYNM
ILNLLRIEAISPEFMLERCFHQFQNAASVPSLEKELMSLQQERDSTSIADESTVKDYYQI
RQQLSAYTRDMRTVIQHPNYSISYLQPGRLVQIYNPKDKNESIAGNGTDFGWGVIVNQTP
RRAPKLNEPEYIPQEAHVIDVLLPISRSSADFHPGHPAEEMPPGIKPCNDDDDIKFAVVP
CLLTCIKAISQIRLFLPKEGLKSDSDKDTLTKSLMEVKRRFPDGLPVLDPIENMEITDDS
FKKLLRKIEVLESRLLANPLHLSPLLPSLWDQYHAKVKLTEKVKETKKSIAKAYSIAQMD
ELKSRKRVLRRLGFINDAEVVQLKARVACEVSSTEGHELLLSELLFDRFFNEQTPEMCAA
VMSCFIFDEKVEAPALKEELQKPYREIQAKARIIAKVSQECKLDVNEEEYAQKLKWQLME
TVYTWAQGRPFVEICKMTNVYEGSLIRLFRRLEELLRQMAQAAKVMGNEDLTKKFEESLS
KIRRDIVAAQSLYL
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atggatgaattgtttgatgttttcgagggcaatgtggaggccccgagtgctagcgaggac
gagtcgcgacagaaccgcaagggcgacaagacaaagaagagaaaggccaacgcgataaac
ggcaagcacggcgacgcggacaagtctgaggatgtcgacatggacaacaacaccaccgag
gaatcaaaggatgaggcatcatccgacgacgagtcttccgaggaaagcgccagtcagcag
gacgccaagaggaggaagaaggaggaagctgtaggccctgttattacagatacgttccag
acggccgagtcaagagaggtcgctggtgcggccacctttacagagcaggattcatctctc
gttttgtcgcacaacattcagcatcaggttgctctgcccccggatctagactacgaatac
gtccctctttccgagcacaaggcccccgagcagcccgcgcgaacatggaacttcaagctc
gatcctttccagagtctctccgtggcgtctattgaacgtgaggagagtattcttgtctcc
gcgcatacttctgccggaaagactgtcgtggccgagtacgccgtcgcgcaatgtttgaag
cgtaaccagagagtcatctacacaagtcctatcaaggccttgagtaaccaaaagtaccga
gatttcgaggccatcttcggagatgttggtctcatgactggagatgttactattaacccc
acagcaagttgcttggtcatgactactgagattttgcgatctatgttgtatcgaggttcc
gagatcatgcgagaagttgcctgggtcgtgttcgacgagattcattacatgcgagacaag
acgagaggtgttgtctgggaggagaccatcatcatgcttcccgacaaggtccgatacgtc
ttcctttctgccaccattcccaacgctttccagttcgccgagtggattgccaagattcac
caccaggcctgtcacgtcgtatacaccgatttccgaccaacaccacttcagaactacttc
ttccctgccggcggcagtggagctagacttatcgtcgacgagaagagcaacttcaacgag
caaaacttcaacaaggttatgcaagaggtcgaggagaagaagggtgctgaccccaacgat
cccaacgcgcgacagaaaggaaagggcaagaacaagaagactaacaagggtggcgctgac
aatggctcggatattgccaagattattcgaatgaccatcaagaagaagtttaaccccgtc
attgtcttcaacttcagcaagcgagagtgcgagaacatggctatgaacatttcctcactg
agcttcaacgacgattctgaaaaggccatggttcgcaaggttttccacaatgctatagag
agcttgtcagagcaggacagggagcttcctcagattatcaacttgctgcctctgttggag
cgtggtattggtgtccatcactctggtcttctgcctattctcaaggagaccatcgagatt
ctgttccaggagtctttgatcaaggttctttttgctaccgagaccttctccatcggtctc
aacatgcctgccaagactgttgttttcacacaagtcaccaagtgggacggtgtcaagagg
cgtcctcttacttcatccgagtacattcagatggctggtcgtgctggacgtcgtggcctc
gatgcccgtggtattgtcatcatgatgattgacgacaagcttgagcccgatacagccaag
gagattgttaccggacaccaagatcgactcaactctgctttctacctcggttacaacatg
attctgaaccttctccgtatcgaagctatctcacccgaattcatgttggagcgatgtttc
catcagttccaaaacgccgctagcgtcccgtccctggagaaggagttgatgtctttgcag
caggagcgcgacagcaccagcattgccgacgagtccaccgtcaaggattactaccagatt
cgacagcagctcagtgcttacacgagggatatgcgaactgtcattcagcaccccaactac
agtatctcatacctccagcctggccgcttggtacagatctacaaccccaaggacaagaac
gagtctattgccggcaacggaaccgactttggctggggtgttattgtcaaccagactcct
cgtcgcgcccctaagctgaacgagcccgagtatattccccaggaggcccatgtcattgac
gttctccttcctatttccaggtcaagcgcggatttccacccaggacaccctgctgaggag
atgcctcccggcattaagccctgcaacgacgacgacgacatcaagttcgcagttgttcct
tgtctgttgacctgcatcaaggcgatcagccagatccgacttttcctgcctaaggaaggc
ctgaagagcgactctgacaaggatacgctcaccaagtccctgatggaggtcaagcgtcgt
ttccctgatggtctccctgtccttgatcctattgagaacatggaaatcaccgacgactct
ttcaagaagcttctgcgaaagattgaggtccttgagtctcgacttttagccaaccctctc
cacctttcccctcttctcccttcgctatgggatcagtaccatgccaaggtcaagcttaca
gaaaaggtcaaggagacaaagaagtccatcgccaaggcatacagcattgctcagatggac
gagctcaagtcgcgcaagcgtgtcctgcgtcgtctaggctttattaacgacgccgaagtc
gttcaactcaaggcccgtgtcgcttgtgaggtttcttccactgaaggtcacgagcttctc
ctttccgagttactgtttgaccgattcttcaacgagcaaacccccgagatgtgcgctgcc
gtcatgagttgctttatctttgatgagaaggtcgaggcccctgctctgaaggaggagctc
cagaagccctaccgcgagatccaggccaaggcccgcatcattgccaaggtcagccaggag
tgcaagcttgatgtcaacgaggaggaatacgcgcagaagctcaagtggcaactgatggag
acggtttatacatgggcccaaggtcgtccatttgtcgagatttgcaaaatgacaaatgtc
tacgaaggctcacttatccgtcttttccgtcgtctggaagagcttcttcgacagatggcc
caggctgccaaggtcatgggcaacgaggatctgactaagaagttcgaggagagtctgtcc
aagatccgcagagatatcgttgccgcccagagtctgtacctataa
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