Fusarium graminearum: FGSG_08663
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Entry
FGSG_08663 CDS
T01038
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
fgr
Fusarium graminearum
Pathway
fgr03013
Nucleocytoplasmic transport
fgr03015
mRNA surveillance pathway
fgr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fgr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FGSG_08663
09122 Translation
03013 Nucleocytoplasmic transport
FGSG_08663
03015 mRNA surveillance pathway
FGSG_08663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgr03019
]
FGSG_08663
03041 Spliceosome [BR:
fgr03041
]
FGSG_08663
Enzymes [BR:
fgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FGSG_08663
Messenger RNA biogenesis [BR:
fgr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
FGSG_08663
Spliceosome [BR:
fgr03041
]
Complex C
Other components
EJC/TREX
FGSG_08663
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
FGSG_08663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
DUF6066
Motif
Other DBs
NCBI-GeneID:
23555657
NCBI-ProteinID:
XP_011320077
LinkDB
All DBs
Position
2:1084865..1087356
Genome browser
AA seq
434 aa
AA seq
DB search
MSHEEDLIDYSDEEIGGNETAATASNGKKGELAAGNNVDKKGSYVGIHSTGFRDFLLKAE
LLRAIADCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVS
VVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDVETLKNKETCPHIIVGTP
GRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPQQKQVMMFSATLSE
EVKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEKEKNRKLNELLDDLQFNQVIIF
VRSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRGIDI
ERINLAINYDLSNDASSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKEIEKRFEVALPE
FPKEGVDASTYMAS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaagatctcatcgattactccgacgaggagatcggtggcaacgagacc
gccgcgactgcctccaacggcaagaagggcgagctcgccgccggtaacaatgtcgacaag
aagggcagctacgtcggtattcattcgaccggtttccgcgatttcctcctaaaggctgag
ttgcttcgcgccatcgccgactgcggtttcgagcatccatcggaggtccaacaaacctgt
atcccccaggcgctcctcggtggtgacattatctgccaggccaagtccggtctgggtaag
actgctgtcttcgttctcgctacgcttcagcaagtcgagcccgtgaacggagaggtctct
gtggttgtcatgtgtcacactcgtgagctggcctaccagatccgcgacgagtacaaccgc
ttcagcaagtacatgcccgacatcaagaccggtgtcttctatggtggtactcccatcaag
accgatgtggagacgctcaagaacaaggagacctgccctcacatcattgtcggtactcct
ggtcgtctgaaggctcttgtccgtgacaaggctctgcgtcttggcagcgtccgcatcttt
gtcctcgacgagtgtgacaagatgctcgatcaacccgacatgcgcactgatgtgcaggat
gttttccgtgctactcctcagcagaagcaggtgatgatgttctcggccaccctttccgag
gaagtcaagcctatctgccgaaagttcatgcagaaccctaccgagcactacgtcgatgag
gacaccaagctcacccttcacggtctccagcagtactacattaagctggaagagaaggag
aagaaccgcaagctcaacgagctcctggatgatctccaattcaaccaggtcatcatcttt
gtgcgcagcactgtccgcgccactgagcttgacaagcttctccgagagtgcaacttccct
tcgatcgccgttcactctggtgtcagtcaggaagaacgtatccgtcgttacaaggagttc
aaggagttcaagaagagaatctgcgttgctaccgacgttttcggacgaggtatcgacatt
gagcgtataaacctggcgatcaactacgatctgtccaacgatgccagctcttacctgcac
cgtgtgggtcgtgctggacgattcggtaccaagggtttggccatctcgttcgtcagcacc
gaccaagaccaggaggtgctcaaggagattgagaagcgattcgaggtcgctctacctgag
ttccccaaggagggtgtcgacgccagcacttacatggcttcctaa
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