Allofrancisella guangzhouensis: SD28_02610
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Entry
SD28_02610 CDS
T03527
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fgu
Allofrancisella guangzhouensis
Pathway
fgu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fgu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SD28_02610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fgu03021
]
SD28_02610
03400 DNA repair and recombination proteins [BR:
fgu03400
]
SD28_02610
Enzymes [BR:
fgu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SD28_02610
Transcription machinery [BR:
fgu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SD28_02610
DNA repair and recombination proteins [BR:
fgu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SD28_02610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AJC48619
UniProt:
L8BTZ1
LinkDB
All DBs
Position
554958..559211
Genome browser
AA seq
1417 aa
AA seq
DB search
MNNGILHQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPVKDYECLCGKYKRLKHRGVVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKSVEKVLYFESYVVIDPGMTPLEKKQLLTDEEYAEALENYGYEFEASMGA
EAIRELLGDTDIESEIERLQTEYEESKSTAKKEKAIKRLRLLETFQASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQEA
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRFGGHATTIKQAKRMVELEESVVWDILEVVINEHPVL
LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITRERDKAKGEGKLFASYEDVSRAYNSGTI
DIHAKIKLRVDRQVFDTRGNTYNEKGVVDTTVGRALLINILPEGLSFSLINKVLVKKEIS
KIINQAFRVLGGKATVVLADKLMYAGFKYSTISGISVGVNDMTIPEDKDTKIEKAEQEIK
YVTEQYQSSLITENERYNNIINIWSKTSDEVGASMMDAISKDKVAVDGQEKEIESFNSVY
MMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVIIEEDCGTDEGLMFSAIVEDGEVKVSLTERALGRT
LAADVVTEKGVVLLESGTLLDENLVELLDDNGIDMIKIRSPITCKTRRGLCSKCYGRDLA
RERKVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGVTISDIKVKTAGKIKFKNIR
TVVNKEGQSIVISRASEIIVSDAMGRVREQHKIPMGAVLPLASGKAVEIGDVIATWDPHA
QPIVTDVAGKIVLEDVIDGITSKHTYDDLTGQQTIEITSISQRITSKNLKPVVKVFDNDG
NELKTITLAAGAVLNVTDDMQVEIGDVVAKIPLEGSKNKDITGGLPRVAELFEARRPKEA
AILSPCDGVVRLGNRDTKEKQRIEIIDKNGHTIEEILLSKSRHLVVFDGEAVSKGDVLAD
GPTDPHDLLKYKGLEAFADYILFEAQSVYRMQGVVINDKHIETIVRQMLRKAVIIDEGSS
KFVREETVELVRILEENDKLNLEGKKEVVYEPVLMGITRSSLSTESFLSAASFQETTRVL
TESSINSQIDHLRGLKENVLIGRLIPTGTGLAVRKEAAKIDKMKEELGVEDRMAFTDVTA
FGVDSSSFEDYRHESQEKDINDDIEESLRNALESLDF
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacggtatcctacatcaaaactacaatagtaaaaaatttgatattataaaaata
tcattagcatctccagaggttatacgttcgtggtctcatggtgaggttaaaaagccagag
actattaactatagaacttttaagccagagagagatggtttattttgcgccaaaattttt
ggtcctgttaaagactatgaatgtttatgtggaaaatataagcgtttaaagcatcgtggt
gtagtgtgtgagcgttgcggtgttgaagttgagcaagctaaagttagaagagagaggatg
gggcatatcgatttagtatgtcctgttgtgcatatctggtatctaaaatctttgccttct
agaattggcttatttttagatatgcctcttaagagcgtagaaaaagtattatattttgag
tcatatgtggttattgatccaggaatgacaccattagagaaaaagcaattgcttacagat
gaggaatacgctgaagctttagagaactatggctatgagttcgaagcgtctatgggagca
gaggctatcagagagttactaggtgatactgatattgagtcagaaatagaacgattacaa
actgaatatgaagaaagcaaatcaacagctaaaaaagagaaagctattaaaagattgaga
cttcttgaaactttccaagcttctggtaataagcctgagtggatggtaatgactgtatta
ccagttcttcctcctgacttaagaccgcttgtgccaatcgagggaggtagatttgctacg
tctgatcttaatgatctctatcgtagagtaataaacagaaataataggcttaaaaaactt
ttagaccttaatgcccctgatattattgttagaaatgaaaagaggatgctgcaagaagca
gtcgatgctttattagataatggtagacgtggaagagctgtaacgggttcaaataagcgt
cctcttaagtcattggctgatatgattaaaggtaagcaaggacgtttccgtcaaaaccta
ttaggtaagcgtgttgactattcaggacgttctgtaattacggtgggcccatctttaagg
ttacatgaatgtggtttacctaaaaaaatggctttagaactattcaaaccatttgtatac
tctaagttgagatttggtggacatgcaacaactattaagcaagcaaaaagaatggttgag
ctagaggagtctgtagtttgggatatcctagaggttgtaattaatgaacatcctgtatta
ttaaacagagctccaacacttcatagattaggtatccaagcatttgagcctaagcttatt
gaaggaaaggctattcagttacatccattagtatgtgctgcttttaatgctgactttgac
ggtgatcaaatggctgttcacgtgccattaacagtcgagtctcaactagaagctagagtc
ctaatgatgtctactaacaacattttatcaccagcttcaggacagcctattattactcct
actcaggatatagtgttaggtttatactatattacaagagaaagagataaagcaaaaggt
gaaggcaaattatttgcaagttatgaagacgttagtagagcatataactctggaactata
gatatccatgccaaaatcaaattaagagtagatagacaagtatttgatactagaggtaac
acatacaatgaaaaaggtgtggttgatacaactgttggtagagctttgcttatcaatata
ttgcctgaaggactgtctttctcactaattaataaggttttagttaagaaagaaatctct
aagataatcaatcaagcatttagagtgttaggtggcaaagcaacagttgtcttggctgat
aagcttatgtatgctggttttaaatactcaactatttctggtatatctgtaggtgtaaat
gacatgactatacctgaggataaagacactaagatagaaaaagcagagcaagaaattaag
tatgtaaccgagcaataccagtcttcacttattactgaaaacgaaaggtataacaatata
attaatatttggagtaaaacttcagatgaagttggtgcttcaatgatggatgctatatct
aaagataaagttgctgttgatggtcaagaaaaagaaattgaatcttttaactctgtgtac
atgatggctaagtctggtgccagaggttcttataatcagatgaggcagcttgctggtatg
cgtggtttgatggctaagccagatggaacgatgattgagacagctattacagctaacttt
agagaaggtttatcggtattgcaatactttacatctactcacggtgctcgtaagggtttg
gctgatacggctcttaagacagctaatgctggttacctgactcgcagattagtagatgta
gcccaagatttggtgattattgaagaagattgtggtacagatgaaggtctaatgttttct
gctatcgtagaagatggtgaagtcaaagtatctcttacagagagagccttaggtagaaca
ttagcagctgacgttgttactgaaaaaggtgttgtattgttagagtcaggtactttattg
gatgaaaatttagtagagttgctagatgataatggtattgatatgattaaaattagatca
ccaattacatgtaaaactcgtagaggattatgctctaagtgttatggtagagacttggct
cgtgaaagaaaggttaatgtcggtgagtctgtgggtgtgattgcagctcaatcgattggt
gagcctggtactcagttaacaatgagaacattccatactggtggtgcagcatccttaggt
gtgacaataagtgatattaaagttaagaccgcaggtaaaattaagtttaaaaatattaga
actgtagtaaataaagaaggtcagagtatcgtaatatcacgtgctagtgagatcattgtt
tctgatgctatgggtagagttagagagcaacataaaattcctatgggtgctgttcttcct
ttagcaagtggtaaagcagtagagatcggggatgtgatagctacttgggatcctcatgct
cagccaatagttacagatgttgcaggtaaaattgttttagaggatgttattgatggtatc
acatctaaacatacatatgatgacctaactggtcaacaaactattgaaataacttccata
tctcaaagaattacttctaaaaacttaaaaccagtagttaaagtatttgacaatgatggt
aatgaattaaaaacgataacattagctgctggagcagtgctaaatgttactgacgacatg
caagtagagataggtgatgtggtcgctaagatcccattagagggctctaagaataaagat
attacagggggcttgcctcgtgttgctgaactatttgaagcaagacgccctaaggaagct
gcaattctttctccttgtgatggtgtagttaggttgggtaatagagatacgaaagaaaaa
caaagaatagagattatagataaaaatggtcataccattgaagaaatattgttatctaaa
tctcgtcatttggttgtatttgatggcgaagctgtatctaagggtgacgtgctagcagat
ggtcctacagacccacatgatctacttaagtataaggggctagaagcttttgctgattat
attctttttgaagctcagtctgtatatcgtatgcaaggtgttgtaattaacgataagcat
atagaaactattgttagacaaatgcttagaaaggcggttatcatagatgaaggtagcagt
aaatttgtgagagaagaaacggttgagcttgttagaattcttgaggaaaatgataaattg
aatttagaaggtaaaaaagaagtagtatatgagccagtattaatgggtattactaggtct
tctttatctacggagtcttttttatcagcggcatctttccaggagacaacaagagtatta
acagaatcttctattaattctcagattgatcatctaagaggccttaaagagaatgttcta
atcggtagattaattcctacaggcacagggttagctgttagaaaagaagcagctaagatc
gataagatgaaagaggaattgggagttgaagaccgcatggcatttacagatgttacagct
tttggagtggacagttcatcttttgaagattaccgacatgaaagtcaagaaaaggatata
aatgatgatatcgaagaatcattaagaaatgctcttgagtcattagacttctaa
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