Allofrancisella guangzhouensis: SD28_04695
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Entry
SD28_04695 CDS
T03527
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fgu
Allofrancisella guangzhouensis
Pathway
fgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD28_04695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgu03019
]
SD28_04695
03009 Ribosome biogenesis [BR:
fgu03009
]
SD28_04695
Enzymes [BR:
fgu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SD28_04695
Messenger RNA biogenesis [BR:
fgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SD28_04695
Ribosome biogenesis [BR:
fgu03009
]
Prokaryotic type
rRNA processing factors
SD28_04695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
KH_1
Anti-TRAP
Antiterm
Flu_C_NS1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AJC48981
UniProt:
A0A0A8E9Z4
LinkDB
All DBs
Position
complement(991498..994107)
Genome browser
AA seq
869 aa
AA seq
DB search
MKKILINSKNSEEIRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY
GEEKNGFLPFKEVSEYYLKDTPTGENIAHLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPEGGGISRRVEGEDREKLKKYLKDLNIPKNMSVIARTACVECSFGELKHD
FDTLVELWQSITQAYHKIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFDDVKRQ
LSLLRQSFDINKVKLYNEELPLFTQHGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID
VNSSRSNKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI
LRKVRAEAMKDDTNEIRVQVPVDMAAYILNEKRENIVDIERISNVKVIIIPNFNMESPKF
QMQRIWGASYKSNRTSPELIEDVYNLEIPKAGKKKIAAVDLTKTVETKVSEKKEEQQQDQ
QSEILETKIEKKSLFAKLANAIFGTKDKSETPQTQPNKKDLNENNSQKNSKPNNKNKENN
EKEKIGGNKPLNNTNKDDSTNSNNKNRHDRDNNQRNNKNNYNNERNTKNKKNDDTDRRSS
NKNNSRSSNININDAEEVVDITKEKYKSQITENPIDNVKKIISRNPDEFISVMVKDILDN
YDSLKSDNAKKITTEEKVKTQKYLKFDTVSVDAELANTFETTDKKEAKIELKIDQQELTP
TETTEKPKQPTKKTETKKATQVTTVTEEKVDIDLEEKDSKKSTKPKADAAKKTTKPAKEK
VEDKKVKQESINEYISYSAAVDFESQKLI
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatactaattaacagtaaaaatagcgaagaaattagaattgctactctagat
aatggtaaactaattgacctagatattgaaaatgttgatagagaacaaaaaaaagctaat
atttacaaaggttatatatcaagaattgagccaagtttaaatgctatttttgtaaattat
ggtgaagagaaaaatggtttcttaccattcaaagaagtatctgaatactatctaaaagat
acccctactggagagaatattgctcatcttttatctgaaggtcaagaactaatagtacaa
atagataaagaagagcgtggcgataaaggtgctgccttaactactttcatcactctagcg
ggctcatacatggtacttttaccaaacaaccctgaaggtggtggcatttcacgtcgcgtt
gaaggagaagatagagaaaaattaaaaaaatatctaaaagatttaaatatccctaaaaac
atgagtgtaatagctagaacagcgtgtgtggaatgttcttttggagaattaaagcatgat
tttgatacgctagtagagttatggcaatctatcacacaagcttaccataagataaaaaaa
cctgcattactacacaaagaaagcgatattatcgttagaactgttagagatcatctaaaa
gaagatgtaaaagaaattatagtagatagcaaagaatgctttgatgatgtcaaaagacag
cttagcttactaagacaaagctttgatataaacaaagttaaattatacaatgaagaacta
cctctgttcactcaacatggcatcgaccaacaaatagaaaacgcgtacaaaagagaaata
cgtctaccttcaggtggctctatagtgatagatacaactgaggctctagtagctatagat
gtaaattcttcaagatccaataaagctgaagatgttgaaactacagcatttaaaacaaat
ttagaagctgctgaagaagttgctagacagcttagaatcagagaccttgggggacttgta
attgttgattttattgacatgtctttctatccaaatagaaagcaagttgaagaaaaactg
atggaggctttacagcaagataaggctcgtattcaaatgtctcgtatttctaaacttgga
cttgttgaaatctcaagacagcgtctaagttcgtctataaatgaaagtgtaatgcaaaaa
tgtcctcgttgtgaaggtcatggttttataaaaactactcaagctacagctcttacaata
ttgcgtaaagtcagagctgaggcaatgaaagatgatactaatgagatccgtgtacaagtc
cctgtagatatggctgcgtacatactaaatgaaaaaagagaaaatatagttgatattgaa
agaatctcaaatgttaaggttattatcatccctaactttaatatggaatctcctaaattc
caaatgcaaagaatttggggagcaagctacaaatctaaccgtacaagtccagaactcatc
gaggatgtatataatcttgaaataccaaaagctggtaagaaaaaaattgcggctgttgat
ttaactaaaactgttgaaactaaagtttctgaaaagaaagaagagcagcaacaagatcaa
caatccgaaatacttgaaacaaaaattgagaaaaaaagtttatttgctaagttagcaaat
gctatctttggtactaaagataaatcagaaacacctcaaactcaaccaaataagaaagat
ttaaatgaaaacaattcacaaaaaaatagtaagcctaataacaaaaataaagagaataat
gaaaaagagaagattggaggtaataaacctctaaataatacaaataaagacgatagcact
aatagtaataataaaaatcgtcatgatcgtgataacaaccaacgtaataataaaaacaac
tataataatgagcgtaatactaaaaataagaaaaacgacgatactgatagacgctcaagc
aacaaaaataatagcaggtctagcaatataaacattaacgatgctgaagaagtagttgat
atcaccaaagagaagtataaatctcagattactgaaaacccaattgataatgttaaaaaa
attatatcaagaaacccagatgaatttatctccgttatggttaaagatattttagataac
tatgatagcctaaaaagtgataatgctaaaaaaataacaactgaagaaaaagtaaaaacc
caaaaatatctaaaatttgatactgtttctgttgatgctgagttagctaatacttttgaa
actacagataaaaaagaagctaaaatagaacttaaaatagaccaacaagagttaactcct
actgaaactactgaaaaacctaagcaacccaccaagaaaactgaaactaaaaaagccact
caagtaactacagttactgaagaaaaagtagatatagatttggaggaaaaagattctaag
aaatctacaaagccaaaagcagatgctgctaaaaaaacaacaaaacctgctaaagaaaaa
gtcgaagataaaaaagtaaaacaagagtccattaatgaatatataagttactctgctgct
gtagactttgaatctcaaaaactaatataa
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