Allofrancisella guangzhouensis: SD28_07075
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Entry
SD28_07075 CDS
T03527
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fgu
Allofrancisella guangzhouensis
Pathway
fgu03410
Base excision repair
fgu03430
Mismatch repair
fgu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SD28_07075
03430 Mismatch repair
SD28_07075
03440 Homologous recombination
SD28_07075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fgu03400
]
SD28_07075
DNA repair and recombination proteins [BR:
fgu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SD28_07075
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SD28_07075
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SD28_07075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AJC49392
UniProt:
A0A0A8E714
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All DBs
Position
complement(1509534..1511276)
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AA seq
580 aa
AA seq
DB search
MLVRQKQINKQVYDYLISNKYDSFIAKLIATRTQSVDSLDLIINGSIKDLSSPFLFKDIQ
KAVDRLYLALQQGEIIGLETDHDCDGQTSQAILYEALTKIFNHPKEKIRSYIGHRMKEGY
GLSESVMNRILTDNVRPSLIITADNGSTDEARIAILKQNGIDTIVTDHHGIPPEGPPKSA
VAILNPTQVDCQYPDKSIAGCMVAWLFMAALRRKFIQSNKVISNEYGLSDLLDLVAIGTV
ADCVSMANSHNNRIVTKLGISQLKRGIRNCWDFFDRDKISSEYIGFSIAPILNSDGRVAD
ALGSVNFLLESDIERIADIFQNLTEQNNQRKEIQKQLSDEVMKQAQELNHTKNSLCIFLK
NGHTGIHGISASKLKEKFGKPVIIFSQTQIDPNLISGSARSVDGIDIKQILDMIANTNPN
LMLKYGGHKGAAGLTIKKQDFDSFYEIFEKCINKLVTELSLSLKPYVEYDFELDGSDFCL
ETLDKIDTLEPFGREFEKPIFYNKFIVENFRLVGKDQSHAQMVLRYNDTQSIKAIWFNAF
DSKIVDKINFGDTIKACYQLQKEEFLGQVSLSLNIKTIQL
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgttagttaggcaaaaacaaattaataagcaagtttatgactatttaatatctaataaa
tatgattcatttatagctaaactcattgctacaagaacccaaagtgtagacagtctagat
ttaataataaatggctcaattaaagacttatcatcgccatttttatttaaagatatacaa
aaagctgtagataggctttatcttgctttgcaacaaggtgaaattattggtttagaaaca
gaccatgattgtgatggacaaacatctcaggcaattctttacgaagctttaactaaaatt
tttaatcatcctaaagaaaaaatcagatcatatatcggtcatagaatgaaagaaggttat
ggcctgtcagaatctgttatgaatagaatccttacagataacgtccgaccaagtttgatt
ataacagcagataatggttctacagatgaagctaggatcgctattcttaagcaaaatggt
attgatactatagtcacagatcatcatggtattccaccagaagggccacctaaaagcgct
gtagcaattttaaaccccactcaagtagattgtcagtaccctgataaatctatagctgga
tgtatggtagcgtggctttttatggctgcattgcgccgcaagtttattcaaagtaataag
gttatctctaatgagtatggtttaagtgatttacttgatttagtagctattggtacagta
gcagattgtgttagtatggctaatagtcacaacaatcgtatagtaactaaactaggcatt
agtcagcttaagaggggtatcagaaattgctgggatttttttgatagagataaaatatca
agcgaatatataggttttagtatagctcctatattaaatagtgatggtagggtagctgat
gctctaggctcagtaaactttttattagaaagtgatatagaaagaatagcagatattttc
cagaaccttacagaacaaaataatcaacgcaaagaaatccaaaaacagctttcagatgag
gttatgaaacaagcacaagaacttaatcatactaaaaattctttgtgcattttcctcaaa
aatggtcatacaggtatacatggtatatcagcaagtaaactcaaagaaaaatttggtaaa
cctgtaattatattttcacaaactcagatagatcctaatttaatatcaggatctgctaga
agtgtagatggtatagatattaaacaaatattagatatgatagcaaatacgaatcctaat
ttgatgttaaagtatggggggcataaaggtgctgcgggattaactattaaaaaacaagat
tttgatagcttttatgagatttttgaaaaatgtataaataaactagttactgagcttagt
ttaagtttaaagccttatgtagaatatgattttgaacttgatgggagtgatttttgttta
gagactttagacaaaatagatactttagaaccttttggcagagagttcgagaaaccaatt
ttttacaataaatttatagtagaaaactttcgattagttggcaaggatcaaagtcatgca
caaatggttttacgttacaatgatactcagtcaattaaggcaatctggtttaacgccttc
gatagtaaaatagttgataaaataaacttcggagatactatcaaagcttgttaccagctg
cagaaagaagaattccttggacaggtatccttatcattaaatattaaaacaattcaatta
tga
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