Fervidobacterium gondwanense: QO060_00055
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Entry
QO060_00055 CDS
T11133
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fgw Fervidobacterium gondwanense
Pathway
fgw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fgw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QO060_00055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fgw03021
]
QO060_00055
03400 DNA repair and recombination proteins [BR:
fgw03400
]
QO060_00055
Enzymes [BR:
fgw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QO060_00055
Transcription machinery [BR:
fgw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QO060_00055
DNA repair and recombination proteins [BR:
fgw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QO060_00055
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
NQRA_N
ECM19
Topo-V_HhH_2_2nd
RestrictionSfiI
YkoP
Motif
Other DBs
NCBI-ProteinID:
XEY04422
LinkDB
All DBs
Position
12987..17939
Genome browser
AA seq
1650 aa
AA seq
DB search
MSSSFKRKIAKVKVSVASPDVVRIWSSGEVKKAETINYRTFKPEKEGLFCERIFGPVKDY
ECACGKYSGKKYEGTVCEKCGVRVESKEARRRRFGHIELAAPVTHVWYLKNTPSVIATLL
DMTVKDIENIVYFGSRRVNERVVIVTDPKNTLFVKGSILNQTEYEIYAKKWDFEVSPAYI
VKEPRTPLISDIDGEVHLKHERTHTDRDLTWITVKNVMRTELRLYTGMELKVKDGDFVNQ
GDEIVPEKHVNAIFAPFDGTVEVDQFSESVTINPLPTSKNTPITFSLPYGVRALVKNGDK
VKKGQQLTTETILPRLIAPVSGTIRYSKQLNLRPLENGSYEVITTGELYIENVQHTKTYP
VFEGALVYVQDGETVRAGDVLADRFLFEDEKLTAEEYKLFSQHYHGMFVVEEQIENDKPI
MVITQIDSDVAQETGLTKGQIITQQDYEAYSMIYPGKIEAETGAAAIKKLLQQLDLEVMK
AEIENELNNIPKSSVRAKKLLKKLKIVKDLIDSETKPEWMVLEVLPVVPPEIRPMIQIDG
GRFATTDLNDLYRRVLMRNNRLRRLYEMNAPEVIVRNEKRMLQEAVDNLIFNGKIGKAYA
DRNGRPLKSLTDLIRGKKGRFRRNLLGKRVDYSGRAVIVVGPHLKIHECGLPKKMALELF
EPFVIAELSKEENVEATQTKVKKYRKELQREDPKAWEKLEKVIQGKVVLLNRAPTLHRMS
IQAFEPKLIEGNAIQLHPLVCPPFNADFDGDQMAVHLPLSPAAQAEARLLMLSRYNIISP
AHGKPISMPGKDIVAGVYYLTMVGKDYDKIQPEEIKWKFASSEEAEIAYEFGYIKLHEPL
LINIDGKVIKTTFGRVIFNAILPEELRDYNKTIGKNGIKDVVYKTFKTHGIDRTADLLDD
IKTLGFHYATVSGLTISLKDFLISPKKDEIIGEAMKKIEEIERLYEEGLLSDDERYKETI
KIWTKTTDLVQEETYKYLGENPFNPVYIMVDSGARGNKDQLKQLSGMRGLMADPSGRTIE
IPIISNFREGLSVLEFFISTHGARKGSADTALRTSSAGYLTRRLVDVVQSVVVSQPDCGT
HEGVRASKMKSSDNFVVEKIEDFIFGRLLAKPVYDPGTGDVLVNPETGKVYVKDTVIYDE
DAKFLSNYKKRVPVAEERILDLTKVELPEVYAELAEDVDLGSETLVSETEIDWEVIKKLR
EANVKSVKIRLYPIVGNVVAEEIIWDKDRKRQLAVEEEQIDSNLAKLLAENNIESIVVRP
EIYVRSPLTCESEHGICAKCYGLDLSNHKVVNVGESVGIIAAQSIGEPGTQLTMRTFHTG
GIATTADITQGLPRVEELFEARKKTKDPEGIFSKVKGTVVDISQDEPKKIYVQDELGSIH
EYVVPSRVRINVTVGQKVLPGQSLTSGSLKVRRILEELGVEDTATYLLKEIKKVYVQQGV
DIHDKHFELIIKQMLNKVEVIESGDTDFLPGDLVPIALINKVNKEIMENNAKIELNRKRL
IEKTIARHILIKNEEGIVEEIAKEGDEVTEELLEKLINFGVKEVVVLNHDKEKEVYQILP
KETAKYRRKLLRITQASLEYEGWLSAASFQQTQQVLTDAAIKGALDTLRGLKENVIVGQL
IPAGTGFEIFANVQYEETPRHAKEEKEKLA
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttcttttaagagaaaaatcgcaaaagtgaaagtttccgtagcatcgcccgat
gttgtcaggatatggtcaagcggagaagttaagaaagccgagacgatcaattaccgtacc
tttaagccagaaaaagaaggtttgttctgtgaaaggatattcggacctgtaaaagactac
gaatgtgcttgtggaaagtacagcggaaagaagtacgaaggtacggtttgtgaaaagtgt
ggtgtaagggtcgagtcaaaagaagcaagaaggagaagattcggtcatatagagcttgct
gcacctgttacacacgtttggtatcttaaaaacaccccaagtgtcatagcgacacttttg
gatatgaccgtaaaagatattgaaaacatagtctactttggcagcaggcgtgtgaatgaa
agggtcgtcatcgtaaccgatccaaaaaatacgttatttgtcaaaggttccatactgaac
caaacggaatacgaaatatatgctaaaaagtgggattttgaagtctcgccagcatatatt
gtcaaagaaccaaggacaccgcttatctctgatatagacggggaagtccacctcaagcac
gaaagaacgcacacagacagggatttaacttggatcacagtcaagaacgttatgcgaact
gaactcaggctttacactggtatggaattgaaagtaaaagacggggattttgtaaaccaa
ggtgacgagatagttccagaaaagcacgttaacgcaatatttgcaccattcgacggaaca
gttgaagtggatcagttctcagaaagtgtaacgattaatcctttgccaacgagtaagaat
acaccaataacgttctctttaccttatggcgtaagagctcttgtcaaaaacggagataag
gtaaagaaagggcagcaattgacaacggaaacgatactgccaaggttgatagcacctgtt
tccggtactattagatacagtaagcaactcaatttgaggccactggaaaatggctcgtat
gaagttataaccactggtgagctgtacatagaaaacgttcagcatacaaagacctatccc
gtctttgaaggtgctcttgtctacgtacaagacggtgaaacagtaagagctggcgatgta
ctggctgatagattcttatttgaagatgaaaaattaacggcagaggagtacaagcttttc
agccagcactaccatggaatgttcgttgttgaagagcaaatcgaaaacgataaaccaata
atggtaattacacaaatagactcagacgttgcacaagaaacaggattaacgaaagggcag
ataattactcaacaggactacgaagcatacagcatgatataccctgggaagatagaagca
gagacaggtgctgccgcaattaagaaattactccaacagctcgatctcgaagtgatgaag
gcagagatagagaacgaactcaacaacataccaaagagcagtgttagggctaagaagtta
ttgaagaaattgaagatagtgaaggatcttatcgacagtgaaacgaaacctgaatggatg
gtcctcgaagtcttgccagtcgttccaccggaaatccgtccgatgattcagatcgacggt
ggaaggtttgcaacgactgacctaaatgacctttacagaagagtactgatgagaaacaac
aggctcagaagattgtatgaaatgaacgcacctgaagttatagtaagaaacgaaaagcgt
atgcttcaagaagctgtcgataatttgatcttcaatggaaagataggtaaggcttacgca
gatagaaatggcagacctttaaaatcgctcacagacttgataagaggtaagaaaggtaga
ttcagaagaaatctcttaggtaagcgtgtcgactactccggacgtgctgtcatagtcgtc
ggtccgcacctcaagatacatgagtgtggtttgccaaagaagatggcactcgagctcttt
gagccatttgtgatcgcagaactttcaaaagaagaaaacgttgaagcaacacagacaaaa
gtcaagaaatacagaaaagagctccaaagagaagacccgaaggcttgggaaaagctcgaa
aaagttatccaaggtaaggtcgtccttctcaaccgtgctccaacacttcatagaatgtca
atacaagccttcgaaccgaaattaattgaaggcaatgctatacagctgcatccgcttgta
tgtccaccgtttaacgcagacttcgatggtgaccagatggcagtccacctaccactttca
cctgctgcacaagcggaagcaaggttattgatgctttcaaggtacaacataatctctcca
gcgcacggaaaaccgatatcgatgccaggtaaggatatcgtagctggtgtttactactta
acgatggtcggaaaagactacgacaaaattcaaccagaagagatcaaatggaaattcgca
agctccgaagaagcggaaatagcttatgaatttggatatataaaactacacgaaccttta
ctaattaacatcgatggcaaagtaataaaaacaacgtttggaagggtcatattcaacgcc
atattgccagaagaactcagagactacaacaagacgattggtaagaacggaatcaaggat
gtcgtgtacaaaacattcaaaacgcacggaatcgatagaacagcggacttgctcgatgac
ataaaaactcttggtttccactacgcaacagtatccggtcttactataagtttgaaagac
ttcttgatttcgcctaagaaagacgaaataataggcgaagctatgaagaagatagaagaa
atagaaaggctctacgaagaaggtcttcttagcgatgatgaaagatacaaggaaacgatc
aagatttggacgaagactacggatcttgtccaggaagaaacatacaaatacctcggtgag
aatccgttcaacccagtatacataatggtcgattctggagcaagaggtaacaaagaccag
cttaagcagctttcaggtatgcgcggtcttatggctgacccatcaggaagaacgatcgag
attccaattatctctaacttccgcgaaggattgtcagttcttgagttcttcatcagtacg
cacggtgcaagaaagggatccgcagacacggcattgaggacaagttctgcaggatatctt
acaagaaggctcgtggatgttgttcaaagtgtcgtcgtctcacaacctgactgtggtact
cacgaaggcgttagagcttccaagatgaagagctctgacaacttcgtagttgaaaagatc
gaagacttcatattcggcagattactcgcaaaacctgtttatgatccaggtacgggtgac
gtactcgttaatcctgaaacaggaaaagtgtatgtcaaagatactgttatctatgatgaa
gatgctaagttcctttcaaattacaagaagcgcgtgccagttgctgaagaaagaatctta
gatttgacaaaggtagaattgcctgaggtatatgctgagctcgcagaagatgtcgatctg
ggttctgaaacgttagttagcgaaacagaaattgactgggaagtaataaagaaacttaga
gaagcgaatgtaaaatccgtaaagataagactctatccaatcgttggaaacgtcgttgca
gaagaaatcatatgggataaagatagaaagagacaattagctgttgaagaggaacaaatc
gattcgaaccttgcaaaattgctcgcagaaaacaacatcgaaagcatagttgttaggccg
gagatatacgtcaggtcaccacttacatgtgagtcagagcatggcatttgtgctaagtgt
tacggattggacctttcaaaccacaaagttgtgaacgttggcgaatcagtaggtatcatc
gctgcacaatcaatcggtgaaccaggtacacagctcacaatgagaactttccacactggt
ggtatcgcaacaacagcagacatcacgcaaggtttgccaagggtcgaagagctattcgaa
gctcgaaagaagacaaaggatccagaaggtatattctccaaagtaaaaggtacagttgtc
gacatctctcaagacgaaccaaagaagatatacgtacaagacgaacttggatccatacat
gaatacgttgtaccttcaagagtgagaattaacgtaaccgttgggcaaaaagttctccct
ggtcagtcacttacaagcggctcactcaaggtgagaaggatacttgaagaacttggtgtt
gaagacacagcaacgtatctgcttaaagaaatcaagaaggtttacgtacaacaaggtgtc
gatattcacgacaaacactttgagcttataatcaaacagatgctcaacaaggtcgaagtc
atcgagtccggtgacaccgacttcttgccaggtgatcttgtgccaatcgctctgatcaac
aaagtgaacaaggaaatcatggaaaacaacgcaaagatagagcttaacagaaagagactc
attgaaaaaactatagcaaggcacatattaataaagaacgaagaaggcattgtcgaagaa
atagccaaagaaggcgatgaggtgacggaagaactgctcgaaaaactcatcaacttcgga
gtaaaagaggttgttgtactaaaccatgacaaagagaaagaagtataccagatacttcca
aaagaaacagcaaaatacagaaggaaattgctcagaatcacacaagcatcgcttgaatac
gaaggctggctgagtgcggcaagtttccagcagacacaacaggtccttaccgatgcggca
atcaaaggtgcgttagacacgctaagaggtctcaaagaaaacgtcatcgtaggacagctg
ataccagcaggtacaggatttgaaatcttcgcaaacgtccagtatgaggaaacaccaaga
catgcaaaagaagaaaaggaaaaattagcatga
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integrated database retrieval system
