Fervidobacterium gondwanense: QO060_01785
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Entry
QO060_01785 CDS
T11133
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fgw Fervidobacterium gondwanense
Pathway
fgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QO060_01785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgw03019
]
QO060_01785
03009 Ribosome biogenesis [BR:
fgw03009
]
QO060_01785
Enzymes [BR:
fgw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QO060_01785
Messenger RNA biogenesis [BR:
fgw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QO060_01785
Ribosome biogenesis [BR:
fgw03009
]
Prokaryotic type
rRNA helicases
QO060_01785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ArdA
DD_DDX21-DDX50
ERCC3_RAD25_C
NAT10_TcmA_helicase
CobA_CobO_BtuR
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XEY04740
LinkDB
All DBs
Position
388799..390421
Genome browser
AA seq
540 aa
AA seq
DB search
MNSTTSVETKLSFKNFGLSDETLKAIEEKGYVEPTEIQRLVLPIALGTDKDIIAQAQTGT
GKTAAFGIPILERIDFKSGKSIKALIVTPTRELALQIYEELKSLKGNRRIRIATVYGGQS
MERQLKDLEKGVDIVVGTPGRLLDHINRKTMDLSNVQYLVLDEADRMLDMGFLDDVLEII
KQTPESKRTFLFSATMPKEIVNIARKFMKEYEHISTVGEELTTENAEQIYFEVDEADKLP
LLCRIIDMNPGFYGIIFCQTKSEVDELSKKLSDLGYNADGLHGDYSQYQRERVLDKFRKR
QLNILVTTDVAARGIDIEGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTKDEY
YHFSKVKRFAKAKIVKDKVPMVEEILNRQLENIVESIKSMPHVSNELYKDIAQKLLQEMG
PTEVVEMLLHALLKERIDVERYGNIKPKDFSKNVSKDSTVRLFVALGTSKGLDKKKLVEY
ISEKTGIEQRNINNVRIFETYSFIDVSEIDAEIIMKTFNKSSRRGKKPSRPLVQIAKPKN
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtacgacaagtgttgaaacaaaacttagtttcaaaaattttggtttaagcgat
gaaacactcaaggctattgaagaaaaagggtacgtggaaccaacggaaatacagaggtta
gtcctcccaatagctttgggaacagataaggacatcattgcgcaagctcaaactggtact
gggaaaaccgcagccttcggaattccaatacttgaaagaattgacttcaaatcaggcaag
agtatcaaggctttgatagtaacaccaacaagggaacttgcattgcagatatacgaagag
ttgaaaagtcttaaaggaaaccgaagaatcagaatagccacagtatatggtgggcagtcg
atggaaaggcagttaaaggatctggaaaaaggcgttgacatagttgttggtacacctgga
agactgcttgaccacattaatagaaagacaatggatctctcgaatgtccaatatttggta
cttgatgaagcagatagaatgttagacatgggatttcttgacgacgttttggagattata
aaacaaacgccagagtctaaaagaacgttccttttctcggcaactatgccaaaggaaata
gttaacatagcaagaaaattcatgaaagaatacgaacacatctcaacagttggagaagag
ctaaccacagagaatgcagagcagatttatttcgaagtcgatgaagctgataaattacca
cttctttgcagaattattgatatgaatcctggtttttacggtatcatcttctgtcaaaca
aaatccgaagtggacgaactatcaaagaaactttctgatcttggatacaacgcagatggt
ttgcatggagattattctcagtaccaacgcgaaagagttctcgacaagtttagaaagagg
caattgaatattcttgtgaccaccgatgttgccgctcgtggaatcgatatagaaggtctt
acacatgtgattaactattcagtaccgagagacccggaatattatgtacatagaatagga
agaactggcagagcaggaaaaaaagggtttgccattacattcgttactaaagatgaatat
tatcacttttcaaaagtcaagagatttgcaaaagccaagattgtaaaagacaaagtacca
atggttgaagaaatccttaatagacagcttgaaaatattgtagaaagtataaaatcaatg
ccccatgtatcaaatgaactatataaggatatagcgcagaaacttcttcaagagatggga
cctacggaagttgttgaaatgctcctgcacgcccttctcaaagagagaatagatgtcgaa
agatacggaaacataaagccaaaggatttctcgaagaatgttagcaaagattcaacagtg
agattgtttgttgctcttggaacttcaaaaggcctcgacaagaaaaaactcgttgagtac
atttctgaaaagacgggaatcgaacaaaggaacattaacaacgtgcgtatatttgaaacc
tattcttttatagacgtgagcgaaatcgatgcggaaataatcatgaagactttcaacaag
agttcaagaagaggcaagaagccatcacggccgcttgtgcaaattgcaaaaccaaagaat
taa
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