Fervidobacterium gondwanense: QO060_05410
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Entry
QO060_05410 CDS
T11133
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
fgw Fervidobacterium gondwanense
Brite
KEGG Orthology (KO) [BR:
fgw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgw03019
]
QO060_05410
Messenger RNA biogenesis [BR:
fgw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QO060_05410
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Ortholog
Paralog
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
HDOD
Cas3_HD
tRNA_anti_2
RMI2
Motif
Other DBs
NCBI-ProteinID:
XEY03500
LinkDB
All DBs
Position
complement(1107444..1108427)
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AA seq
327 aa
AA seq
DB search
MSNLREALEKLRPPYAEELRNFVDREIDGVFKVKSKRLQETKDGKKFLLLTLEDRTGSVR
AIDWYNAELNDQVLQPGNVVSVSGKVVYFEEKVQINILNSQSAVRKLTENEYDVERFVGS
VKNVEELYKTLLRLVDKVRDNDYKEILKRFFVEDVSFAEAFKNAPAGMKIHHAYRGGLLE
HSVNVAKIVESVCNIYDDLDKDLLITGALLHDIGKVKEYVINQKGIEVTTDGELMGHILM
GVEMLSQKARGISYDKILRLKHLIASHHGEFEWGAPVLPKTPEALVLHFVENMDSKINRV
FQIIDKEDREKEWSEYDSNLSRRFFLR
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaatctgagagaagcactggaaaagttgagaccgccttacgcggaagagttgagg
aattttgttgatagggaaatcgatggagtgttcaaagtaaaaagtaaacgactccaagag
acaaaggacgggaaaaagtttctactactgacccttgaagacagaacaggaagcgtaagg
gcaatagattggtacaatgcagaacttaacgaccaagttttgcaacctggcaacgttgtc
agcgtttcgggaaaagtagtttatttcgaagagaaagttcaaataaacatcttgaattca
caaagcgctgttaggaaattgaccgagaacgagtacgatgttgagagatttgttggaagt
gtaaagaacgttgaagagctctataagacgctattgaggctcgttgataaagtacgcgat
aacgactataaagaaattctgaaaaggttttttgtggaagatgtgagttttgcagaggcg
tttaagaacgcccctgctggtatgaaaatccaccatgcctacaggggcggattgttggaa
cactcggttaatgttgcaaagatagttgagagtgtttgcaacatctacgatgacctcgat
aaagacctgctcataactggagcactacttcacgatattggaaaagtaaaagaatacgtt
ataaaccaaaaaggtatagaggtaaccaccgatggtgaattgatgggacatatcctgatg
ggcgttgagatgctctctcaaaaagcaaggggcataagttacgacaaaattctgcgctta
aaacacttaatagcttcgcaccatggggaattcgagtggggtgcaccagtgctcccgaaa
acgccggaggcattagttcttcattttgtagagaacatggactccaagataaatagagtc
tttcaaataatagataaggaagacagagagaaagaatggagcgaatatgactcgaacttg
agcagaagatttttccttaggtaa
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