Fervidobacterium gondwanense: QO060_07670
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Entry
QO060_07670 CDS
T11133
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fgw Fervidobacterium gondwanense
Pathway
fgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QO060_07670 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgw03019
]
QO060_07670 (rnr)
03016 Transfer RNA biogenesis [BR:
fgw03016
]
QO060_07670 (rnr)
Enzymes [BR:
fgw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QO060_07670 (rnr)
Messenger RNA biogenesis [BR:
fgw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QO060_07670 (rnr)
Transfer RNA biogenesis [BR:
fgw03016
]
Prokaryotic type
tRNA degradation factors
QO060_07670 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Rep3_N
Motif
Other DBs
NCBI-ProteinID:
XEY03927
LinkDB
All DBs
Position
1615780..1618086
Genome browser
AA seq
768 aa
AA seq
DB search
MPKKNELKKFFKSEEYTPMTFKELCRYFGLNDDKEKQLLKEQLEELTESGFIFKRDDGRY
AITKGNLFTGTIEFTRSGNLTFVLTDDGQEIAVPIEKTNLAMHKDKVQVQIVGKWYELPE
GRVVRILERGIKQFVGVFQTRGQFSFVIPDDPKLPYEFAVPVEEINGAKPGMKVVAEITR
YPSVKRSPEAKIIEVLGKVEDPATDFPTVVVKHNLPVQFPEEVLKEVAELPDNVRPEDIE
GRWDFRDEIIVTIDGPDAKDFDDAVQVKKLPNGNYLLGVHIADVAHYVKPGTALDQEAYN
RATSVYLADRVIPMLPFKLSNGLCSLVQGEDRLVMSLLMEIDRDGDVVNYKVGNGVIRSY
RRLVYDDVNAFLEDKPEGDKLKDLAEHIYLMKELKDVLRENRRRRGAILDIEGDEVKIVL
DEQGHAVDIVPRKRGESEVIIEEFMIKANETVAEIFHNADIPFLYRIHEEPDFDTLLQLK
NYLSAIGIKMKLPQRVHPRVLQELLEKTKDHPLRSSIQRLLVRSMKRAVYSPGNVGHFGL
ASEAYTHFTSPIRRYPDLIVHRLLKLYLEKGGAIQKKEMKKLEKYLAKAAVHCSKRERVA
DEAEWDYDALKKIDYISKRIGEIYDVVVTSVTKFGMFVEIPDKYISGLIHVSTLDDYYYY
DDVKSMLVGKHTGTVYRIGDMLKAKVVRADKIRMEINFEIPTDEELRMLESNAKSNRGKK
SEQIEKKGKKSKKKVKTEDVEQTYELREKSGVKNGSRKDKRRSRKAKK
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
gtgcctaagaaaaacgagttgaaaaaattttttaagtctgaagaatacaccccaatgaca
tttaaagaactgtgcagatactttgggttaaacgatgataaagaaaaacagttgttgaaa
gaacaattggaagagcttactgagagtggatttatttttaagcgagacgacggaagatat
gcaatcacgaagggaaatctctttactggtacaatagaatttacgagaagtggtaattta
acatttgtcttaacagacgacgggcaagagatagcggttcctattgaaaaaacaaatctt
gcaatgcacaaagacaaggttcaagtgcagattgttggcaagtggtacgagctacccgaa
ggtagagtcgtacgcatattggaacgtggaataaaacagtttgtcggtgtttttcagaca
cgcgggcaattttcatttgtgataccggatgatccaaaacttccatacgaatttgctgta
cctgttgaagaaatcaacggcgcaaagcctggaatgaaggttgttgcagagattacccgc
tatccttcagttaaaaggtcgcctgaggcaaaaataattgaggtgcttggaaaggtcgaa
gacccagctactgattttccaactgttgttgtgaaacacaatttgccagtgcaattccct
gaagaagttttaaaggaagttgccgagttgccggataacgtaagaccagaagatatcgag
ggcagatgggatttcagagatgaaattatagtcacaatcgacggacctgacgctaaagat
ttcgacgacgctgtgcaagtaaaaaaacttcctaatggaaattatttgctgggcgtacat
attgcagatgttgctcattatgtaaagccaggaactgcactcgaccaagaagcctataat
cgtgcaacgagcgtgtatttagctgatagagtaataccaatgctcccgttcaagctttca
aacggactgtgtagtcttgtgcaaggtgaagataggctggtaatgtctttgcttatggaa
atcgatagagatggtgacgttgtgaactacaaagtcggaaacggcgtgattagaagttac
agaagattagtatacgacgacgtgaacgcatttttggaagataaaccagaaggcgataaa
ttgaaagaccttgcagagcatatatatctcatgaaagagttgaaagatgtgcttagagaa
aacagaaggcgcagaggagctattctcgacatagaaggggacgaagtaaagattgttctc
gacgaacagggtcatgcggttgacatagtcccgagaaaacgcggagagtcagaagtcatt
atcgaagaattcatgattaaagctaatgagacggtggctgaaatattccacaatgcagat
attccgtttctatatcgtatccacgaggagcctgattttgacacgcttttgcaattaaag
aattatcttagtgccataggtataaagatgaaactgccacaaagggtgcatccaagagtt
ctgcaagaattactcgagaagacgaaagaccatccactgagaagtagtattcaaagactc
ttagttcgctctatgaaacgtgccgtgtattctccgggcaacgttggacattttggactt
gcgtctgaagcgtacactcattttacgtctcctataagacgttatccagacttaattgta
cacagattattgaagctgtacttggaaaaaggtggagctatacagaaaaaggaaatgaag
aagttagaaaaataccttgcaaaagcagccgtccactgcagtaaacgtgaacgcgttgcc
gacgaagcagaatgggattacgatgccttgaagaagatagactatatatccaaacgtata
ggtgaaatatacgatgtcgttgtgacctcagtgacaaaatttgggatgttcgttgagatt
ccagataaatacatctcaggtttgattcacgtgtcgacacttgatgattattactactac
gacgatgttaaaagtatgcttgtgggtaagcatactggaactgtttataggatcggcgat
atgctaaaagctaaggtagttcgagctgataaaatcagaatggagataaattttgagata
cctacagatgaagaattgagaatgcttgaaagtaatgccaaaagcaatagaggtaaaaag
agcgaacaaattgaaaagaaaggtaagaaaagcaagaagaaggtgaaaacagaagatgtt
gagcaaacctatgaattaagggaaaagagtggtgtaaagaatggttcccgaaaagataag
agaagaagtagaaaagctaagaaatga
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