Fervidobacterium gondwanense: QO060_09305
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Entry
QO060_09305 CDS
T11133
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
fgw Fervidobacterium gondwanense
Pathway
fgw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fgw00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QO060_09305 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fgw03021
]
QO060_09305 (rpoD)
Transcription machinery [BR:
fgw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QO060_09305 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HTH_15
Exonuc_VII_L
GCR1_C
NAGidase
Motif
Other DBs
NCBI-ProteinID:
XEY04232
LinkDB
All DBs
Position
complement(1963921..1965039)
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AA seq
372 aa
AA seq
DB search
MSKTLSKDDLELQKKLEKLVELGKRKGYITYDDIDRTFPPGELDMTESNVLDVVYETLEK
NRIEIRDTSDFSNIEEEVKAYLSEGPEIFDSTEPKDLIKMYLRDIGKIRLLTPSEERKLA
QRAQKGDKRAKEELIISNLRLVVSMAKRYLGKGLSFLDLIQEGSLGLIKAVEKFDWSKGY
KFSTYATWWIRQAITRAIADQARTIRVPVHMVETINKIQKIKREYMQEHGEEPPIEYLAE
QVGKPVEKIEEILQATPETLSLETPVGEEDDSSMADFVADESIASPKKEAIRTLMNEEIS
KLLETLNDREKMVIKMRYGLLDGKSKTLEEVGQYFGVTRERIRQIEVKALRKLRHPSRSR
YLRLLQKLTEED
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
gtgtctaaaactctctctaaggatgatttggaacttcaaaagaagctcgagaaattggtg
gagcttgggaagaggaagggttatataacttacgatgatatcgaccgcacgttcccaccg
ggggaactagatatgaccgaaagcaatgtcttagacgttgtttatgaaacgcttgaaaag
aataggattgaaattcgcgatacgagcgatttttctaatatcgaagaagaggttaaggct
tatctgagcgaaggacctgagatattcgatagcaccgagccaaaagatttgatcaaaatg
tacttgagagatataggaaagatcagattgttaacaccgtctgaggaaagaaagctcgca
caaagagctcaaaaaggcgataagagggcgaaagaagagctcatcatttcgaacttaaga
ttggttgtcagcatggcgaagagatacctcggtaaggggctttcgttcttagatctcatt
caagaaggtagcttgggattgataaaggccgttgaaaagttcgattggtcgaagggttac
aagttctctacgtatgctacttggtggataagacaagctatcacaagagctatcgcagac
caagcaaggacgatcagggtgccagtccacatggttgaaacgatcaacaagatacagaag
ataaaaagagagtacatgcaagaacatggtgaagaaccacctatcgaatacttagctgaa
caggttggaaaacctgtcgagaagatagaagagatattgcaggcaacaccggagacttta
tcattggaaacaccagttggtgaagaagacgattcttcgatggcggatttcgtagctgac
gaaagcatcgcatcgccaaaaaaagaggcaatcagaacgttgatgaacgaagaaattagc
aaactgctcgaaaccctcaacgatagggaaaaaatggtaataaagatgagatacggactt
ttggatggtaagtcgaaaacgttggaagaagtcggtcagtacttcggcgttacgcgcgag
agaatcaggcagatagaggttaaggcgttgagaaaactgagacatccatcaagaagcagg
tacttgaggttgttgcagaaacttacggaagaagattga
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