Francisella halioticida: CDV26_04590
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Entry
CDV26_04590 CDS
T04972
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fha
Francisella halioticida
Pathway
fha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDV26_04590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fha03019
]
CDV26_04590
03009 Ribosome biogenesis [BR:
fha03009
]
CDV26_04590
Enzymes [BR:
fha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDV26_04590
Messenger RNA biogenesis [BR:
fha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDV26_04590
Ribosome biogenesis [BR:
fha03009
]
Prokaryotic type
rRNA helicases
CDV26_04590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Utp25_C
Cas3-like_C_2
AAA_19
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
ASG67764
LinkDB
All DBs
Position
839592..841298
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AA seq
568 aa
AA seq
DB search
MNSETKKDFSQLGLSQDILDTVNKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNMDFDSRDRAPQVLVLAPTRELAIQVAEQFEAFAKNISNLDVTCIYGGQEYGS
QIRALKRGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHV
SDECQRLLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVVKGFRKIDALD
RLLEVEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFKSSKSD
VLVATDVVARGIDLERISHVINYDMPGDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFL
RILERFTGSPMQEVFMPNAKDLANSRIENLKSRVTSVLDKNKSLDKYKEIIIDIRDELEL
DSDELLAVLTLLAQGKKTFFPREIQARDDKPRRDKNSRDGRRNDRFDRRDDRGDRNSRFD
RSDRKPRRSVNIDLTTYKLEIGRDNDVQPRNIVGAIANEGNIDSKHICNISIQKDHTLVD
LPSDLSPKVVSHLKRVWVAGKKLNITAQ
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgaaactaaaaaagattttagtcagcttggactaagtcaagatatcttagat
actgttaataaattagggtatgaaaatcctacaccaattcaacagtatgctattccatat
atcttatcgggtagagatgtgcttggtcaggcacaaacgggtacaggtaaaacagcagct
tttgcattacctttaataaataatatggactttgactctagagatagagcaccacaagtt
ttggtattagctccaactagagagctagctatacaagttgctgagcagtttgaggctttt
gcaaagaatatatcaaatctagatgttacttgtatctatggtggtcaagaatatggttca
cagattcgagcacttaaaagaggtgtcaaagttgtagtaggtactacaggtcgtgtaatg
gatcatattgaaaaaggtacattacaacttgataatctaagagcattagtgttagatgaa
gctgatgagatgcttagaatgggttttattgatgatgtaaagtttgtcttaagtcatgtt
tctgatgagtgtcagagattacttttctcagcaacaatccctactgatattgcggatatt
atacaagaatatcttagaaatccttgtaagatacaagtaaaagcaaaaacgaaaacagct
aatactgttactcagaaatttatagttgtcaaaggctttagaaaaatagatgctttagat
agattacttgaagttgaagaaactgatggtgttattatctttgtaaaaactaaaactagt
actatagaagttgcagataatttaaaagctctcggttacaaagtcgcagcaataaatggt
gatatgcaacagtcacagagagaatatatcgttgatcagtttaaaagctctaaatctgat
gtattagtcgctactgatgtagttgctagaggtattgatcttgaaagaattagccatgta
attaactacgatatgcctggtgatacagatacttatgtacacagaattggtcgtacaggt
agagcaggtcgtgagggtacatctatttctttagttcctctaaaggaaatgagattttta
cgtattttagagagatttacaggttcaccaatgcaagaagtttttatgccaaatgcaaag
gatttagcaaatagtaggatagaaaaccttaaatctagagtaacttctgtattagataag
aataaatctttagataaatataaagagataattatagatattcgtgatgagttagagctt
gattctgatgaacttctagctgttttgacattacttgctcaaggcaaaaagactttcttt
cctagagaaatacaagctagagatgataagcctcgtagggataaaaattctagagatggt
cgtaggaatgatagatttgatcgtagagatgatcgtggtgatagaaatagtcgctttgat
agatctgatagaaaacctcgtagaagtgtaaatattgatttgactacatataagctagag
attgggcgtgataatgatgttcagcctagaaatattgtaggagcaatagcaaatgaagga
aatattgatagtaaacatatttgcaatatttctattcagaaagatcatactttagtagat
ttaccatcagacttatctccaaaagttgtaagtcatcttaaaagagtatgggttgctggt
aaaaaattaaatattacagctcaataa
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