Francisella halioticida: CDV26_08000
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Entry
CDV26_08000 CDS
T04972
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fha
Francisella halioticida
Pathway
fha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDV26_08000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fha03019
]
CDV26_08000
Enzymes [BR:
fha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDV26_08000
Messenger RNA biogenesis [BR:
fha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDV26_08000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
P-loop_SecA
AAA_22
HI1480
MerR-DNA-bind
DUF2357
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
ASG68338
UniProt:
A0ABM6M0R4
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All DBs
Position
complement(1489854..1491167)
Genome browser
AA seq
437 aa
AA seq
DB search
MQFSDLGLNSSICNALDKKGYTKPTAIQSKAIPLILKGNDVMASAQTGTGKTAGFALPII
QKLLDQPKAQANKIKVLVLTPTRELAAQIEDQVRLYGQNTHIRSTVVFGGVSINPQMMKL
RKGVEILIATPGRLLDLYSQNAIKFDNLNTLILDEADKMLDMGFIHDLKRIHKLLPKKIQ
TLMFSATFSSEIKTLANEFLSNPKSVSADVVNTTVKKITQKIYTLDKSKKINALISLIRE
QDLHQVLVFSRTKHGANKISEKLNKANITSSAIHGNKSQGARTKALADFKDKEINVLVAT
DIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSNIEH
LIGHLLPRDELAGLEAIHNVPVTSMSRKTKVKKVNEVKIIAAKRANNNNKSSGHNKDFAR
SIKQKINANKNVKKPKG
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgcaattctcagatcttggtttaaattcttcaatttgtaatgctttagataaaaaaggc
tatactaaaccaacagctattcagtcaaaagctatcccattaattttaaaaggtaatgat
gtaatggcatcagctcaaacgggtactggtaaaactgctggttttgcattacctattata
caaaagcttttagaccagcccaaagcccaagcaaataaaattaaggttttagttttaaca
ccaactagagagctagcggctcaaattgaagatcaagttagattatatggtcaaaataca
catattcgttctacagttgtgtttggaggtgtaagtataaatcctcaaatgatgaaattg
cgtaaaggtgtagagatattgatagctactccaggtagactgcttgatttatatagtcaa
aatgcaattaaatttgataatctaaatactttaatccttgatgaagctgataagatgtta
gatatgggatttatacatgatctaaaaaggattcataaacttctacctaaaaaaatccaa
actctaatgttctcagcaactttttcatcagagattaaaacactagctaatgaatttctt
agcaaccccaaatctgtatcagcagatgtcgtaaatactacggttaaaaaaattactcag
aagatttatacattagataaatcaaaaaaaattaatgcattaatatctttaattagagaa
caagacttacatcaagtattagttttttctcgcacaaaacatggtgcaaataaaatctca
gaaaaacttaataaagcaaatataacaagtagcgctattcatggtaataaaagccaaggg
gctcgtacaaaagctctagcagactttaaagataaagagataaatgtgttagttgctaca
gatatagctgcacgtggtattgatattgctcagctcccatgtgttataaatctagattta
ccaaatgttgctgaggattatgttcatagaattggtagaactggtagagcaggccaagat
ggcttagcaatatctttagttagtgcagatgaagtagaatcattgtcaaatatagagcat
ttaattggtcatcttttacctcgtgatgagctcgctggtcttgaggctattcataatgtc
cctgtaacaagtatgtcacgaaaaactaaagtgaaaaaggttaatgaagttaaaataatt
gcagcaaaaagagcaaataataataataaatcaagtggtcataataaagattttgctaga
agtattaagcaaaaaattaatgctaataaaaatgttaaaaaaccaaaagggtaa
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