Francisella halioticida: CDV26_08095
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Entry
CDV26_08095 CDS
T04972
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fha
Francisella halioticida
Pathway
fha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDV26_08095 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fha03021
]
CDV26_08095 (rho)
03019 Messenger RNA biogenesis [BR:
fha03019
]
CDV26_08095 (rho)
Transcription machinery [BR:
fha03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CDV26_08095 (rho)
Messenger RNA biogenesis [BR:
fha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CDV26_08095 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
AAA
Mor
ResIII
S1CSD-TOTE-2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASG68352
UniProt:
A0ABN5B1B9
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All DBs
Position
1507116..1508378
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AA seq
420 aa
AA seq
DB search
MNLNELKYKSVNELMDIAQSLDLESLRARKQELIFSILKYHADKGEDIYGEGILEVLQDG
YGFLRSSDSSYFASPDDIYVSPAFIRKLNLRTGDSIVGKIRPPRDNEKYFAVKHIDSVNF
DSPELARKKILFENLTPEYAKERLTMEIGNGSNEDITARVIDLAAPFGKGQRGLIVAPPK
TGKTIMMQNIATSIAKNHPECNLIMLLIDERPEEVTEMQRSVRGEVVASTFDEPAARHVQ
LAEIVIEKAKRLVEHKQDVVILLDSITRLARAYNTVSPASGRVLSGGVEANALQKPKRFF
GAARNTAEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELHLDRKISERRVYPAISFD
RSGTRREELLTSQEELQKLWVLRKILGGMEDVQAMEFLTEKMKGSLTNEEFFQTMKRGAI
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaatgaattaaaatataaatctgttaatgagctaatggatatagctcaaagc
ctggatcttgaatcgcttcgcgcaagaaaacaagaacttatcttttcaatcttaaaatat
catgctgacaaaggtgaagatatttatggtgaaggtattttagaagttctacaagatggc
tatggttttctaagatcctcagatagctcatattttgcatcacctgatgatatctatgtt
tcacctgcttttattagaaaactaaatctacgtactggtgatagtattgttggtaaaatt
cgtcctcctcgcgataatgaaaagtactttgcagttaagcacattgacagtgtaaacttt
gattctccagaacttgctagaaagaaaatcttatttgaaaacctaactcctgaatatgct
aaagaaagattaactatggaaataggtaatggttcaaatgaagatattacagctagagtt
attgatttagcagctccatttggtaaaggccaacgtggcttgattgttgcccctcctaaa
acaggtaaaacaattatgatgcagaatattgcaacatcaattgccaaaaaccatcctgag
tgtaatctaattatgctgctaattgatgagcgtcctgaggaagttacagaaatgcagcgt
tcagtacgtggtgaagttgtagcatcaacatttgatgagccagcagctcgtcatgttcaa
ttagctgaaattgtaattgaaaaagctaaaagattagttgagcataagcaagatgttgta
atcctactagattcaattacaaggttagctcgtgcatacaatactgtatctcctgcttct
ggccgtgtattatctggtggtgtagaagcaaacgctctacaaaaacctaaaagattcttt
ggtgctgcccgtaatacagctgagggtggtagcttaacaataattgctactgcacttgta
gaaactggttctaaaatggatgaagttatctttgaagagtttaaaggtactggtaacatg
gagcttcatcttgatcgtaaaatctctgaacgtcgtgtttacccagctattagctttgat
agatctggtactcgtagagaagaacttctcacatcccaagaagaattacaaaaactttgg
gttctacgcaaaattcttggtggcatggaagatgttcaagctatggaattcttaacagaa
aaaatgaaaggctctctaactaatgaagaattcttccaaaccatgaaaagaggtgctatt
tag
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