Francisella halioticida: CDV26_08640
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Entry
CDV26_08640 CDS
T04972
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fha
Francisella halioticida
Pathway
fha03030
DNA replication
fha03430
Mismatch repair
fha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CDV26_08640
03430 Mismatch repair
CDV26_08640
03440 Homologous recombination
CDV26_08640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fha03032
]
CDV26_08640
03400 DNA repair and recombination proteins [BR:
fha03400
]
CDV26_08640
Enzymes [BR:
fha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CDV26_08640
DNA replication proteins [BR:
fha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CDV26_08640
DNA repair and recombination proteins [BR:
fha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CDV26_08640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
fn3_2
DUF211
Motif
Other DBs
NCBI-ProteinID:
ASG68451
LinkDB
All DBs
Position
complement(1615815..1619294)
Genome browser
AA seq
1159 aa
AA seq
DB search
MISHLRVHTGFSVVDSTVRLGDLFARAKDKNIVAIALTDVCNLFAAVKFYKQALESGVKP
IFGAELKIDTELGVSDLILLAENKNGYQNVVDLISRVYQEADRVGSIPLIPKSWLKESSL
ENVICLSGGQNGELGKAILAKDNVKAEEIITENLAIFGQDNYVIEIHKLGYENEGLYNEK
VLELATKYNLIAVATNLTVFMESDDYDIHEIRVCINEKTTILDESRKSRFTRQQYLKSAD
EMYDTFSSLPVLVDNTLAIAKRCNVTFDLGKPYLPTVDIPDGLTEKEYFSKLCYQGLESR
LEKVLANKSQDKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDFIRWSKENDIPVGPG
RGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFCIQGRDRVIKYVEQK
YGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFSFGDRIAKLIPETPGTTFKKILHEGEPL
YDETQIDEDVAEIVEKAQKLEGLPRSLGKHAAGIVISPTKISDFAPVYCEDKGGDIVTQF
DKGDVEDVGLVKFDFLGLKNLTIIKNAITSINTKRSNDETSLNISDIPLDDEKTFKLLQA
GNTTGIFQLESQGMRQIVKDLGTSNFGEIIALVALYRPGPMENIPIFIDRKHGRKRTIYL
HPLLEEVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGKKKPEEMEKQRKIFKE
GAAKYHNIEASLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAWLKAHYPDEYMAALMS
GDMGNTDQLVKFILDCKNMGITVLAPSVNKSAYDCIAISKSIILLGLGAIKGLGGEAIKS
ILTERQAEGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDISRNRATAFNSIEKAIKN
AGYVNEMVAAGQNDLFGFTEQENDTDTELERECISEEWSLKKLLINEKKALGMYFSGHIL
DEESHWRNHVSFSDLQKIQQSNMDGNSVRIIASMIAPAIRRRTKTGRILYIINIDDEFDR
VDCLVGEDVFALVKDNIQVDDIVVVEGKVSRDIQRECNKLSVGKVQPISQYIDENFSKIE
VNLRTKNINPTNLKKVLDNLRINIASVDTQKENALEIEVYLDGVDGKFDCLRKPFSIYEF
VNDISRLIAEGSTVNLSSG
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgatttctcatcttagagttcatacaggattttccgttgtggatagtactgtgcgttta
ggcgatctttttgctagagcaaaagataaaaatatcgtagcaatagcacttaccgatgta
tgtaacttatttgctgcagtgaagttttataaacaggctttggaaagtggtgttaaacca
atttttggagctgagttaaaaattgatactgaattgggagtttctgatttaatactttta
gctgaaaataaaaatggttaccaaaatgttgttgatttaatctctagagtatatcaagaa
gcagatagagttggttcaataccacttattccaaaaagttggctcaaagaatctagttta
gagaatgtgatatgcttaagtggtggtcagaatggagagcttggtaaagcaattttagct
aaagataatgttaaagctgaagagattatcactgaaaatctagcaatatttggccaagat
aattatgtcattgaaattcataagctagggtatgaaaatgaaggtttatataatgaaaaa
gttcttgaattagcgactaaatataatctaattgcagtagcgacaaaccttacagtattt
atggagtctgatgattatgacattcatgagattagagtatgtattaatgaaaaaactaca
attcttgatgaatcacgcaaatcaaggtttacacgacaacaatatctaaaatcagcagat
gagatgtatgatacttttagctctttgccagttttagttgataatacattagctattgca
aaacgttgtaatgtgacatttgatttaggtaagccttatctaccgactgtagatattcca
gatggtttaacagagaaagaatatttctcaaagctatgctatcaaggcttagaaagccgt
ttagaaaaagtactagcaaataagtcacaagataaacatgaacatattataaaggtttat
aaagataggctacaaagagagattgatattatttgtgatatggggtttcctggctatttt
ctaatagtagaggatttcatcaggtggtcaaaagaaaatgatattccagttggaccaggg
cgcggttctggtgccggttcattggtggcgtattcgttacttattacagacattgatcct
ttaccgtatggactactttttgagagatttttgaatccagaaagggtatcaatgccagat
tttgatattgatttttgtattcaaggtagagatagagttattaaatatgtagagcaaaaa
tatggtaagcaaagtgttggtcagattataacctatgggacaatggctgctaaaggtgta
gtgcgagatgtagtgcgtgtaatgggtcaaagttttagttttggtgataggattgctaaa
ttgattcctgaaactcctgggactacatttaaaaagattctccacgagggtgagccttta
tatgatgaaacgcaaattgatgaagatgttgctgaaattgttgaaaaagctcaaaaactg
gaaggtctaccacgtagtttaggtaagcatgctgctggtattgttatatcgccaacaaaa
atttctgattttgctccagtatattgtgaagataagggtggcgatattgtaactcagttt
gataaaggtgatgttgaagatgttggtcttgttaaatttgactttttaggactaaaaaac
ttaacaattatcaaaaatgcgattacaagtattaatacaaaacgatcaaatgatgaaact
tcactaaatatatcagatattcccttagatgatgagaagacatttaagctattacaagca
ggcaatactacagggatattccagttagagtcacaagggatgcgccagattgtcaaagat
cttggcacctctaattttggagaaattattgcactagtggcactatatcgtccaggtccg
atggaaaatattccgatctttattgatcgtaaacatggtagaaaaagaactatatatttg
catccattactagaagaagttttaaaagaaacttatggtatcccagtttaccaagagcaa
gtaatgcaaatggcacaaaaacttgctggttatactcttggtggagcagatttattacgt
cgtgcaatgggtaagaaaaagccagaagaaatggaaaaacagcgtaagatttttaaagaa
ggtgctgcaaaatatcataatattgaagctagtcttgctgatgaaatatttgaccaaatg
gaagcttttgctgggtatggttttaataaatcacatgctgctgcgtatgcgttgattgct
tatcaaactgcttggttaaaagcacactatccagatgagtacatggctgcattgatgtca
ggagatatgggcaatactgaccagctagttaagtttatcttagattgtaaaaatatgggg
attacagttttagcacctagtgtgaataagagtgcttatgattgtatagctatttcaaaa
agtattattttacttggtttaggagctattaaaggacttggtggtgaggctattaagagt
atacttacagagcgacaagcagaaggagagtttagctcaatatttgatctgacgcgtaga
gtagacttacgtaaagttaataagaaagctcttgaagctttatgttttgcaggagctatc
aaagatatatctagaaatagggcaacagcatttaattctatcgagaaagctatcaaaaat
gcaggttatgtaaatgagatggtagctgctgggcaaaatgatttatttggttttacagag
caagaaaacgatactgatacagagctagaaagagaatgtatatcagaagagtggagtctt
aaaaagctattaatcaatgaaaagaaagctctaggaatgtatttttcagggcatattctt
gatgaagagagtcattggcgtaatcatgttagttttagtgatcttcaaaagatccaacag
tctaatatggatggtaattctgtgagaattatcgcgagtatgatagctccagctatacgt
agaagaaccaaaactggtaggattttatatattataaatattgatgatgaatttgataga
gttgattgcttagttggtgaagatgtatttgccttagtgaaagataatattcaggttgat
gatattgttgtcgttgagggtaaagttagccgtgatatccaacgtgaatgtaataaatta
agtgttggtaaggtccagccaatatcacaatatattgatgagaattttagtaagattgag
gtaaatcttagaactaaaaatataaaccctacaaatcttaaaaaagtccttgataactta
aggataaatattgcatctgtagatactcaaaaagaaaatgctttagaaatagaggtttat
ttagatggtgtggatggtaaatttgattgcttacgaaagcctttttcgatatatgaattt
gtaaatgatattagtagattgatagctgagggtagtacggttaatttgagtagtggttga
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