Francisella halioticida: CDV26_09180
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Entry
CDV26_09180 CDS
T04972
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fha
Francisella halioticida
Brite
KEGG Orthology (KO) [BR:
fha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fha03019
]
CDV26_09180 (hrpA)
Enzymes [BR:
fha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CDV26_09180 (hrpA)
Messenger RNA biogenesis [BR:
fha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CDV26_09180 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
RsgA_GTPase
nSTAND3
T2SSE
ABC_tran
HA2_N
NTPase_1
NACHT
Flavi_DEAD
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ASG68539
LinkDB
All DBs
Position
complement(1724510..1728421)
Genome browser
AA seq
1303 aa
AA seq
DB search
MPNFKNQISNLLNHIPTNLRGKYIFLSRRKSICSNLLAEELEDLSKQTDQKVLPKITYPN
LPVAEKVDDIKKLIQENQVIVVAGETGSGKSTQLPKICLDLGLGKRGLIGHTQPRRIAAR
SIANRVATEIGDQSKVSFKIRFSDQTSENTLIKVMTDGVLLSEIKNDRFLSQYEVIIIDE
AHERSLNIDFLLGCIKKILPFRPDLKVIITSATIDHQKITSYFQKAKEIAISGRTYPVEI
CYQNDEGFDTFSMQERILYAIDELGRGDVLVFLPTERDIHETLAYLNKQDLRFTEVLPLF
SRLSNKDQNKIFNPEGSTQRIILATNVAETSLTVPRIKYVIDSGLARVSRYSYRTKVQRL
PIEKISQASANQRAGRCGRLSAGICVRLYSEEDFNNCKEYTDPEILRTNLASVILQMLFL
RLGGIQEFPFIDSPDPRFIKDGFRLLFELQAISELNYSKAKITADGMKMAIMPLDPKLAK
IVIEGHRQNTLKEIVSIVSFLSVQDPRERPLNFQQKADEKHSVDKNKSSDFITILNLANR
LSIDLRELSNREKKEYFKKNFISPVRFNEWNDIYRQIVEVIHGFGWKLNSNHQSKQSICH
SELDLEPVSSKYKGQNDEILKQVQDDDSGIVNYENFHKAIASGFLSNIGFNYENAEYFGA
RGLKFFIFPGSSQFKKKPKWLLSSEIVETTKTYARNVAKIEPEWLEDLAKHLVKKHYDEP
IWSKKRRSVVVNERVTLYGLEIVSKRSVQYSRINPQEAREIFIREALVNGDFESKAYFYQ
QNLKLIDQVEDLENKSRRKDILVDEQAMYQHYDSFIPRNVCSGVTFDKWLKTISKDEQHK
LIFDLDDLMQHDAKEVTQQKFPDVLAIGEMHLPLEYHFDPLDERDGATVIVPVVFLNDIN
PNVLEWGVYGFLYDKIVGLLRSLPKNIRKNCVPVPTYAQAIFESIDFDLDRYEPLKSVIA
KHIIRIVGSIVDETVWQDEELERHLILNIKVVDEKGKILAIDKDLHILKQKLKDLVQKPK
IVIDDKIYYDWEFGDFAQTSQIKEYGISVKVYNCLDEYESGVRVSYKATFEEAQDCMQKA
LKKLIRLRLQNHLSKRVKNNDLASLSMSLKLDNSKDDIVDKAIDLSFFDNVELPYTKNNF
ESFYSNGLKHFELNKSKVEAIVSEISKYKVQLEKKLNIKKIPFNFIQLFTDAQSELDELF
SDDYLSQPVTYLQRYKYYIQALENRLEKARFNLQRDRGCQIEVNELRKKLEKKIKVNHIN
RNSQEIIKIKFLINELWISFYLQNIKTIQSISYKKIQAFINVI
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgcctaactttaaaaatcaaatttcaaatttattaaatcatataccaacaaacttacgt
ggcaaatatatatttttgtcaaggagaaagagcatatgttctaaccttctagccgaagag
cttgaagatttatccaaacaaactgatcaaaaagtattgcccaaaataacatatccaaat
ctacctgttgcagaaaaagtagatgatataaaaaaacttatacaagaaaatcaagtaata
gtcgttgctggtgaaactggatcaggtaagtcaacacaattacctaagatctgcttagat
ttaggtttaggtaaaagaggtttgatagggcatactcagccaagaagaatagctgctaga
tctatagcaaatagagttgctacagaaataggtgatcaatcaaaggtttctttcaaaata
cgtttctctgaccagacatctgaaaacactttgataaaagtaatgactgatggtgtgctg
ctatctgaaattaagaatgataggtttttatctcaatatgaagttatcataattgatgag
gcgcatgagagaagtttaaatattgattttcttctagggtgtataaaaaagattttacca
tttaggcctgatttaaaagttattataacttcggctactatagatcatcaaaaaattaca
agttattttcaaaaggctaaagaaattgcaattagtggtagaacatatcctgtagagatt
tgttatcaaaatgacgaaggttttgatacattttcaatgcaagagagaattttatatgca
attgatgagttaggtagaggagatgttttagtattcttaccaacagaaagagatattcat
gaaacactagcatatttaaataaacaagatctcagatttactgaagttttgcctttattc
tcaagattatcaaataaagatcaaaataagatttttaatccagaaggttcgacacaaaga
attattttagcgacaaatgttgctgaaacatctttgactgtcccacgtattaaatatgtt
atagattctggtttggctagagttagtagatatagttatcgtaccaaagtacaacgatta
ccaatagaaaaaatatcgcaagctagtgcaaatcaaagggctgggcgttgtggaagatta
tcggctggtatttgtgtacgattgtatagtgaagaggattttaataattgtaaagagtat
acagatcctgagattttacgtactaatttggcatcagttattttacaaatgttattttta
aggttagggggtattcaagagtttccatttattgattcacctgatccaagatttattaaa
gatggctttagacttttatttgagctacaagctatctcagagcttaattactcaaaagca
aaaatcacagctgatggtatgaaaatggcaattatgccattagatccaaaattggcaaaa
atagttattgaaggacatagacaaaatactcttaaagaaattgtttcgattgttagtttt
ttaagcgtccaagatccacgtgagaggcctttaaactttcagcaaaaagctgatgaaaaa
cactctgtagataaaaataagtcttctgattttattactattttgaatttagctaatcgg
ttaagtattgatttaagagaactttcaaatagagaaaaaaaagaatattttaaaaagaat
tttatttcaccagttagatttaatgaatggaatgacatttataggcaaattgttgaggtc
attcatgggtttggttggaaacttaatagtaatcaccagtcgaaacaaagcatttgtcat
tctgaacttgatctagagcctgttagctctaagtataaaggtcaaaatgatgagatcctg
aaacaggttcaggatgacgatagtggtatagttaattatgaaaacttccataaagctata
gcgagtggttttttgagtaatattggctttaattatgagaatgctgagtattttggtgct
agaggacttaagttttttatatttccagggtcgtcacaatttaagaaaaaacctaagtgg
ttattatcttctgagattgttgagacaacaaaaacttatgcacgtaatgttgcaaaaatt
gaacctgaatggttagaagacttggctaaacatctagttaagaaacattatgatgaaccc
atatggagtaaaaagcgtaggtctgtggtagtaaatgagagagttactctttatggttta
gaaatcgtttcaaaaagatctgtccaatattcaagaataaatccacaagaggcgagagaa
atatttattcgggaagctttagtcaatggtgactttgaatctaaagcatatttttatcaa
caaaatcttaaattaatagatcaagttgaagatcttgaaaataagtcgcgcagaaaagat
attttagtagatgagcaggcgatgtatcaacattatgatagttttataccaagaaatgtt
tgtagtggtgtgacttttgataagtggttaaaaactatctcaaaggatgaacaacataag
ttgatttttgatttggacgatttgatgcaacatgatgccaaagaagttacacagcaaaag
tttccagatgtcttggctattggggaaatgcatttaccgttagaatatcattttgatcca
cttgatgagcgagatggcgcaacagttattgtaccagttgtttttctaaatgatataaac
cctaatgtattagagtggggcgtgtatggttttttatatgataagattgtcgggttgtta
agatctctaccaaaaaatatccgtaaaaattgtgtgccagtgccaacttatgctcaagct
atatttgagtcaatagattttgatttagataggtatgaaccattaaagtcagttattgca
aaacatattataagaatagttggttctatagttgatgaaactgtctggcaagatgaagag
ttagaaaggcatttaattctaaatatcaaagtagttgatgagaaaggaaaaatattagct
atagataaggatttgcacattctaaagcaaaaacttaaagatctagtacaaaagccgaaa
atagtgatagatgacaagatctattatgattgggagtttggtgattttgcgcaaacaagc
caaataaaagagtatggtataagtgtaaaagtatataactgtcttgatgagtatgaaagt
ggtgtaagggtttcctataaagcaacatttgaagaagctcaagactgcatgcaaaaagca
ttgaagaagctgattagattgcgcttacaaaatcacttatcaaaaagggttaaaaataat
gatttagctagtttgtcaatgtcattaaaactagataattcaaaagatgatattgtagat
aaggctatagatttaagcttttttgataatgttgagttaccttatacaaaaaataacttt
gaaagcttttatagtaatggattaaagcattttgagttaaataagtctaaagttgaagct
attgtatccgaaatatctaaatataaagttcagcttgagaaaaaacttaatattaaaaaa
ataccatttaactttattcaacttttcacagatgcccaaagtgagttagatgaacttttt
agtgatgattatttatctcaaccagtaacctatttacagaggtataaatattatattcaa
gcgttagaaaataggttggaaaaagcgaggtttaatttgcaaagagatagagggtgccag
attgaagttaatgagcttagaaaaaaattagagaaaaaaattaaagttaatcatattaat
agaaactctcaggaaatcataaaaataaagtttttaatcaatgaattatggatatctttc
tatctacagaatataaaaactatacaatcaatttcgtataaaaaaatacaggctttcatt
aatgttatatag
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