Francisella hispaniensis FSC454: FSC454_06770
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Entry
FSC454_06770 CDS
T04700
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fhi
Francisella hispaniensis FSC454
Pathway
fhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSC454_06770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fhi03019
]
FSC454_06770
03009 Ribosome biogenesis [BR:
fhi03009
]
FSC454_06770
Enzymes [BR:
fhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FSC454_06770
Messenger RNA biogenesis [BR:
fhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FSC454_06770
Ribosome biogenesis [BR:
fhi03009
]
Prokaryotic type
rRNA helicases
FSC454_06770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
Utp25_C
SNF2-rel_dom
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
APD50826
UniProt:
A0AAC9J7W6
LinkDB
All DBs
Position
complement(1389626..1391338)
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AA seq
570 aa
AA seq
DB search
MDSETKKDFSQLGLSQDIVDTVINLGYETPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNIDLKSRDKSPQVLVLAPTRELAIQVAEQFEAFAKNIPNLDVACIYGGQEYGS
QIRALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRFVLSHI
SEQCQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALD
RLLEIEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRNAKSD
ILVATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFL
RTLERFTSSPMQEVFMPSAKDLAQSRVEHFKARVISGLDKNKSLDKYKEIITSIRDELEL
DSEELLAVLTLLAQGKKTFFPREIQAKEEKLTRDNRNSRDGRKNERFERRNDQDNRAKRF
DKADRKPRRAVVNIDLTTYKLDVGRDNDVQPRNIVGAIANEGNIDSKHICNISIQKDYTL
VDLPANLSPKVINHLKKVWVAGKKLNLTAQ
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggattctgaaactaaaaaagattttagtcagcttgggctgagtcaagatattgtagat
actgttatcaacttaggatatgaaactcctacaccaattcagcagtatgctattccatat
atcttatcgggtagagatgtgctaggacaagcacaaacgggtacgggtaaaactgcggca
tttgcattaccattgataaataacattgatttaaaatctagagataaatcaccacaagtt
ttggtattagctcctactagggaattagctatacaggttgcagaacagtttgaagcattt
gctaaaaatataccaaatttagatgttgcttgtatctatggtggtcaagaatatggttct
caaataagagcacttaagcaaggtgtaaaagttgtagttggtacgactggtcgagtaatg
gatcatatcgagaaaggcacattacaacttgataatctaagagcattagtcttagatgag
gctgatgaaatgctcagaatgggctttattgatgatgttagatttgtcttaagtcatatt
tctgaacaatgccaaagattacttttctcagcaacaattcctactgatattgctgatatt
atcgaagagtacttaagaaatccttgtaagatacaggtaaaggctaagacaaaaactgca
aatacagttacacaaaaatttatcgtaatcaaaggctttagaaagatagatgctttagat
agattacttgagatagaagaaactgatggtgttattatctttgttaagactaagacaagt
actatagaagtagcagataatttaaaagctcttggttataaagtggcagctataaatggt
gatatgcaacaatcacagcgtgaatatattgttgatcagtttagaaatgctaaatcagat
atcctcgttgctacagatgtagtagctaggggcatagatcttgagcgaattagtcatgta
attaactatgatatgcctaatgatactgatacatatgtacatagaattgggcgtacaggt
agagcagggcgtgaaggcacatcaatttctttagtaccacttaaagagatgagattttta
cgtactttagagagatttacaagttcgccaatgcaagaggtatttatgccaagcgcgaaa
gatttagctcaaagtagggtagaacattttaaagctagagtaatttcaggattagataaa
aataaatctttagataaatataaagaaattattacaagtattcgcgacgaattagagcta
gattcagaagagcttttagctgtacttactttgttagcacaaggtaaaaaaactttcttt
ccaagagagattcaagctaaagaagaaaagctaactcgtgataatagaaactctagagat
ggtagaaaaaatgaaagatttgagcgtagaaatgatcaagataatagagctaaacgtttt
gataaagcagatagaaaaccgcgtcgtgctgtagtgaatattgatctaactacttataag
ctggatgttggtcgtgataatgatgttcagccaagaaatattgttggagctatagctaat
gaaggaaatattgatagtaagcatatctgtaatatttctattcaaaaagattatacatta
gttgatttaccagcaaatctttcaccaaaagtgataaatcatctaaaaaaagtctgggtt
gctgggaagaagttaaatcttacggctcagtaa
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