Francisella hispaniensis FSC454: FSC454_07390
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Entry
FSC454_07390 CDS
T04700
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fhi
Francisella hispaniensis FSC454
Brite
KEGG Orthology (KO) [BR:
fhi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fhi03019
]
FSC454_07390
Enzymes [BR:
fhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FSC454_07390
Messenger RNA biogenesis [BR:
fhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FSC454_07390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
nSTAND_NTPase5
RsgA_GTPase
AAA_19
nSTAND3
AAA_23
T2SSE
NACHT
WHD_HA2
NTPase_1
ABC_tran
Flavi_DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
APD50928
UniProt:
A0AAC9J6V0
LinkDB
All DBs
Position
complement(1506201..1510124)
Genome browser
AA seq
1307 aa
AA seq
DB search
MPKQTIDTLLNQIPTKLRSNFISAINNNKFPKQQLLTDLQLLAEQTSQKILPKIAYPDLP
VAERVDDIKKLLQDNQVIVVAGETGSGKSTQLPKICLDLGLGKRGLIGHTQPRRLAARSI
ASRIASEIGDQSKVSFKIRFSDQTSENTLIKVMTDGVLLSEIKNDRFLSQYEVIIIDEAH
ERSLNIDFLLGCIKKILPSRPDLKVIITSATIDHQKFINFFQNAKDIIISGRTYPVEIRY
QNDEDFEELSLQERILYALDELGRGDVLVFLPTERDIHETLAYLNKQNLRFTEVLPLFSR
LSNKDQNKIFNPEGSARRVILATNVAETSLTVPRIKYVIDSGLARISRYSYRTKVQRLPI
EKISQASANQRAGRCGRLSAGICIRLYSEEDFNNRKEYTEPEILRTNLASVILQMLFLKL
GSIQDFPFIDAPDARFVKDGFKLLFELRAISELNYSKPKITADGIKMATMPLDPKLAKIV
IEGHRQNTLREIVSIVSFLSVQDPRERPLNFQQKADEKHSIDKDKSSDFIAILNLANRLN
SDFKSLSNREKKDYFKKNFISPIRFNEWNDIYRQIVEVVHGFGWRLNNVIKSGLTAESPV
RRKTGHSHASGNLMVDDQGLKDTHLHGYDNVGDNINYENLHKAIASGFLSNIGFNYENAE
YLGARGLKFFIFPGSSQFKSKPKWILASEIVETTKTYARNVAKIEPEWLESLAEHLVKKH
YDEPIWSKKRRAVIVNERVILYGLEIVSKRVVQYSKINPQEAREIFIREALVNGNFDSKA
YFYQQNLKLINHIEELENKSRRKDILVDEQTMFEHYDAFIPDGVCDGATFDKWLKTVRKE
QQKSFIFDLKSLMQHDAKEITQQKFPDVLTIGDMHLPLEYHFDPLDERDGATVTVPIVFI
NDINPTVLEWGVYGFLYDKIVALLRALPKNIRKSCVPVPTYAQAIFESLDFDKDTYTPLK
SVIAKHITRIVGFVVDETVWQNEELEKYLVLNIKVVDEHGKTLALGKDINTLKQKLKNLV
NKPKQAVDEKIYYDWDFADIALTSEIKEYAIIVKVYNCLEEYKDGVKLSYKATLAESESC
MKRALKKLIKIRLHHNLSKSIKNNDLTSLSMSLKLSDSKDNVVDKAIDLSFFDNIELPYA
KEDFERFYALGMQKFVSNKAKVEALFLEITKFKSQLEKKLNVKKIPLNFIELFTATRNEL
NELFTNNYLSQSMIYLQRYKYYIQALEARLDKAKLNLQRDRTHQLEVDDLKAKLAKKLVT
KHLGASSEEVTKIGFLIKELWISWYLQNVKTIESVSVKKILVHIYQL
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaacaaactattgatacacttcttaaccaaatacctactaagcttcgtagtaac
tttatatcagctataaataacaataagtttccaaaacaacaattactgactgatttacaa
ctcttagcagaacagactagccaaaagattttgcctaaaatagcttatccagatctacct
gttgctgaaagagttgatgatataaaaaagcttctccaagataatcaagttatagttgtg
gcaggagagacaggctctggtaaatcaacccagcttcctaaaatctgtctagatttagga
cttggtaagcgtggattaattggacacactcaacctagaagacttgcagctagatctatt
gctagtagaattgctagtgaaataggtgatcagtcaaaagtatcttttaaaattcgtttt
tctgatcaaacttctgaaaatactttaataaaagtaatgaccgatggggtattactgtct
gaaatcaagaatgataggtttttgtcgcagtatgaggttattatcattgatgaggctcat
gaaagaagcttaaatattgattttctacttggctgtataaaaaagattttaccatctaga
cctgatttaaaagtaattattacttcagcaaccatagatcatcaaaaatttataaatttt
tttcaaaatgctaaagatattataattagtggtagaacatatcctgtcgaaattcgctat
caaaatgatgaggattttgaagagctgtcattacaagaaagaatattgtatgctcttgat
gagctcggcagaggagatgttttagtctttttgcctacagaaagagacattcatgaaaca
ttagcatatttgaataaacaaaatcttagatttacagaagttttacctttgttttcgagg
ttgtcaaataaagatcaaaataaaatctttaatccagaaggttctgcacgtagagttatt
ttagcgacaaatgttgcggaaacatctttgacagtaccacgcataaagtatgttatagat
tcaggtttagcgcgaataagtagatatagttatcgtactaaggtacaacgtctaccaata
gaaaaaatctctcaagcaagcgccaatcaaagagcaggtcgctgtggtaggttatctgct
ggtatctgtatacgcctttatagtgaggaagactttaataatcgcaaagagtacacagag
cctgaaattttacgtactaatttggcatcggttattttacagatgttatttctaaaatta
ggaagcatacaagattttccatttattgatgctcctgatgcaaggtttgtaaaagatggt
ttcaaactcttgtttgaattacgagctatctcagagcttaactatagcaaaccaaagatt
actgcagatggtatcaaaatggcgactatgcctttagatccaaaacttgcaaaaatagtc
atagaaggccataggcaaaatacgcttagagagattgtctcgattgttagctttttgagt
gtacaggacccgcgtgagagacctctgaactttcagcaaaaagctgatgaaaaacattca
atagataaagataaatcttctgattttatcgcaattttaaatttagcaaatagactaaat
tctgattttaaaagcttatctaatagagagaaaaaagattattttaaaaagaactttatt
tctccaattagatttaatgaatggaatgatatttatcgacaaattgttgaagttgttcat
ggatttggttggagactaaataatgtcattaagtcgggcttgaccgcggagtctccagtg
cgaagaaagactggtcattcccacgcaagtgggaatcttatggttgatgatcaaggtttg
aaagatacccatctgcacgggtatgacaatgttggtgataatataaactatgaaaactta
cacaaagccatagccagcggttttttaagtaatattggctttaattatgaaaatgctgag
tatttaggagctagagggcttaagttttttatatttccaggatcttcacaatttaagtct
aagccgaaatggatcttagcatcagaaatagtcgaaaccactaaaacatacgctcgtaat
gttgcaaaaatagagccagaatggttagagagcttagcggagcatcttgtcaaaaagcat
tatgatgagcctatttggagtaagaagcgtagagctgtaatagtaaatgaaagggtaata
ttgtacggcttagagatagtttcaaaaagagtagtgcaatactcaaagataaatcctcaa
gaggctcgcgaaatttttattagagaagctttagtaaatggtaattttgactctaaagcg
tatttctatcagcaaaatctcaagcttataaatcatattgaggagcttgaaaataaatca
cgccgaaaagatattttggtggatgaacagacgatgtttgagcattatgatgcttttatt
ccggatggggtttgtgatggtgcaacatttgataagtggctaaaaacagttagaaaagag
cagcagaagagtttcatttttgatttaaaaagtctgatgcaacatgatgctaaagagatt
acacaacagaagtttcctgatgtattaactattggtgatatgcacttgccattagaatac
cactttgaccctttagatgaacgagatggtgcaacggttacagtaccgatagtttttatt
aatgatataaatcctacagttttagagtggggtgtgtatggtttcttgtatgacaagatt
gtcgctttgttacgcgctttacctaaaaatattcgtaaaagctgtgtgccagtgccaact
tatgctcaagctatatttgagtcgctagattttgataaagatacatatactcctttaaaa
tctgtcattgctaaacatattacgcgtattgttggattcgtagttgatgagacagtatgg
cagaatgaagagttagagaaatatttagttttaaatataaaagttgttgatgagcatggt
aaaacacttgcgctgggtaaagatatcaatactttaaaacaaaagctcaaaaacctagtt
aataaacctaagcaagcagtcgatgagaaaatttattatgattgggattttgctgatatt
gctttgactagcgaaattaaagagtacgctataatagtcaaagtctataactgtcttgag
gaatataaagacggtgtgaaattgtcttataaagcaactttggcagaatcagaatcctgt
atgaaaagggctttgaagaaacttattaaaatacgtttacatcataacttatcaaaaagt
attaaaaacaatgatttgacaagtttatcaatgtcattaaagctaagtgactcaaaagat
aatgtggttgataaggctatagatttgagtttttttgataatattgagctaccatatgct
aaagaagattttgaaagattctatgctttagggatgcaaaagtttgtttcaaataaggct
aaagtcgaagcattgtttttagaaataactaagtttaaatcacagcttgaaaaaaaacta
aatgttaaaaaaataccgcttaattttattgaactttttacagctactagaaatgagctt
aatgagctttttactaacaattatctatcgcaatctatgatttacttgcagcgatataag
tattatattcaagctttagaagctcgattagataaggctaaactaaatctgcaaagagat
aggacccatcaattggaggttgacgatctaaaagctaagctagctaaaaagcttgttact
aaacatcttggtgctagtagcgaggaggtaaccaaaattggctttctgataaaagagtta
tggatttcttggtatttacaaaatgtaaaaactattgaatcagtttcagttaagaaaata
ctagttcatatatatcagctatag
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