Fructilactobacillus hinvesii: M3M39_02950
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Entry
M3M39_02950 CDS
T08844
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fhin
Fructilactobacillus hinvesii
Pathway
fhin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fhin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M3M39_02950 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fhin03021
]
M3M39_02950 (rpoC)
03400 DNA repair and recombination proteins [BR:
fhin03400
]
M3M39_02950 (rpoC)
Enzymes [BR:
fhin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M3M39_02950 (rpoC)
Transcription machinery [BR:
fhin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M3M39_02950 (rpoC)
DNA repair and recombination proteins [BR:
fhin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M3M39_02950 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
USS88447
UniProt:
A0ABY5BTI8
LinkDB
All DBs
Position
620308..623952
Genome browser
AA seq
1214 aa
AA seq
DB search
MVDVNKFKSMQVGLAAPETIRSWSFGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWKC
ACGKYKGIRYKGIVCDRCGVEVTRAKVRRERMGHIELAAPVTHIWYYKGIPSRMGLVLDM
SPRSLEEVIYFAAYVVTDPGNTPMEKKQLLTEQEYRDKKREYGNRFEAEIGAEAIRTLLD
DVDLEKEVGELKEELKSATGQKRTRAIRRLDILEAFLTSGNQLNWMVMDAIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLHAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKLSQMGLPVS
MALELFKPFIMHELVERGLASNVKNAKREIERKDDVVFDVLPDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKSMRLHPLVCAAYNADFDGDQMAIHVPLSEEAQAESRLLMAAAGHIL
APKDGKPVVAPSQDMVIGNYYLTMEEPNREGEGMIFNDPNEVELAYRDGLVHWHSRIGIK
AAAYPDKPFTDDQKDKIMVTSVGKVIFNQILPKAFTYLNEPTETNLHGYVPDEYFLEPGE
DIHEHLANAELVKPFKKGFLSDIIAEVYSQYKVTETSELLDRIKDLGNDESTKSGLTVGM
GDIMDLHEKPVVVAEAHKKVDTITKQFRRGLITDQERYERVVDVWNNARDEIQEDLLKNF
DPENPIFMMSDSGARGNISNFTQLAGMRGLMASPDGKIMELPITSNFREGMSVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREKDCGTDRGLTVTAITEGNEMIEPLY
DRILGRNAMKTVTNPQTGEVIVDRNEMIDDKKAQAIVDAGIEAVEIRSAFTCNTAHGVCE
RCYGQNLATGDEVEVGEAVGTVAAQSIGEPGTQLTLRTFHTGGVASNTDITQGLPRVQEI
FEARNPKGKSTISEVTGVVELIEEDPAEGVKEITIQGKADTRKYKVPLTARMRVAEGDTV
RRGEALNEGSIDPKELLKIRDTLSTETYLLTAVQEVYRRQGVEVNDKHAEIMVRQMLRKV
RVMDPGDTDILPGTLIDIDDFKEQNRDAVMTGKVPATARPVLLGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKVDPLIGLKENVIIGKLLPAGTGVHEYEDIEPEELGQTADQGVTA
PSDQTTSVDSDDAE
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggttgatgtgaacaaatttaagagcatgcaagttggtttggctgctccagaaacgatc
cgcagctggtcgtttggggaagtaaaaaaaccagaaaccattaactaccggacgttgaaa
ccggaaaaagacggattattcgacgaacggatctttggaccaaccaaggactggaaatgt
gcctgtggaaagtacaaaggaatccggtacaagggaattgtgtgtgaccgttgtggagtt
gaagttacccgcgctaaagttcggcgggaacgaatgggccacattgagttagctgctcca
gtaactcacatttggtactacaagggaattccgagccggatgggcttggtcttagacatg
agtccgcggtccttagaagaagtcatctacttcgcggcctacgttgttaccgatcccggg
aataccccgatggaaaagaaacaactgttaacggaacaagaataccgagacaagaagcgt
gaatacggcaaccgatttgaagctgaaattggagcggaagccattcgaaccctgttagat
gacgtagatctggaaaaagaagttggcgaactcaaagaagaattgaagtccgctacggga
caaaaacggacccgggccattcgtcggttagacattctggaagcctttttgacttctggt
aaccaactaaattggatggttatggatgcgattccggtaatgccacctgacttacggcca
atggtccaactcgaagggggtcggtttgccacctctgacttgaacgacttgtaccggcgg
gtaattaatcggaataaccgattaaaacggttgcttgatttacacgcaccgggcatcatc
gtgcaaaacgaaaagcggatgcttcaagaagccgtggatgccctgatcgataacggtcga
cgtggtcgtccagtggctggtcctggaaaccggccactgaaatcattgtcccacctctta
aagggaaagcagggacggttccgtcagaacttgttggggaaacgggttgactactctggt
cgttccgtgatcgacgttggtccatggttgaagttaagccaaatggggctaccagtttcg
atggccttagaattgtttaaaccgttcattatgcatgaactggtggaacgtgggttagct
tcgaacgtgaagaacgctaaacgcgaaattgaacgaaaagacgatgttgtctttgatgtg
ctgccagatgtaattaaagaacaccctgtcctcttaaaccgggcccctaccttgcaccgg
ttaggaatccaagccttcgaaccagtgttagtaagcggaaaatcaatgcggttacaccca
ttagtttgtgctgcttacaacgctgattttgatggagaccagatggccattcacgtgcca
ctgtcagaagaagctcaagcagaatcccggcttttaatggccgctgcgggtcacattttg
gcaccaaaggatggaaaaccagttgtggctccatctcaggatatggtgattgggaactac
tacctcacgatggaagaacccaaccgggaaggtgaaggcatgatcttcaacgaccctaat
gaagtagaattagcctaccgtgatgggttagtgcactggcacagccggattgggattaaa
gccgctgcttatccagacaagccgtttacggacgaccaaaaagataagatcatggttact
tccgtcggaaaggtgatctttaaccagatcttgcctaaggcctttacctacctgaatgaa
ccaaccgaaacaaacttgcatgggtacgttccggatgaatacttcttggaaccaggcgaa
gatatccacgaacaccttgccaacgctgaattggtaaaaccgtttaagaaaggcttttta
tcagacatcattgcggaagtatacagtcagtacaaggtgactgaaacctccgaactgctg
gaccggattaaagaccttggaaacgatgaatccacgaagtctggtttgacggtcggaatg
ggtgacatcatggacctacacgaaaagcccgttgtggttgcagaagcccacaaaaaggtt
gatacaatcacaaagcagttccggcggggattaattaccgaccaggaacggtacgaacgg
gttgtggacgtttggaacaacgcccgtgacgaaatccaagaagacctgttgaagaacttc
gacccagaaaacccaatcttcatgatgagtgactctggtgcccggggaaacatctcgaac
tttacgcagttagccggaatgcggggtttgatggcatctcctgatggaaaaatcatggaa
ctgccaattacctcaaacttccgggaaggaatgtccgtcttggaaatgttcatttcaacc
cacggagcccggaaagggatgaccgatacggccttgaagacggccaactcaggttactta
actcggcggttggttgacgtggctcaagacgttattattcgggaaaaagactgtggcact
gatcgtggtttaaccgtgactgccatcacggaagggaacgaaatgattgaaccactttac
gatcggattttaggtcgaaatgccatgaagacggttacgaacccgcaaacgggcgaagta
attgtggatcgaaacgaaatgatcgatgacaagaaggcccaagcaatcgtggacgctggc
atcgaagccgttgaaattcgctccgcctttacttgtaatacggcccacggggtttgtgaa
cgttgttacggtcaaaaccttgctaccggtgacgaagtggaagtgggagaagcagtcgga
acggttgctgctcaatctattggtgaaccaggaacgcagttaaccctccggactttccat
accggtggggttgcaagtaacactgatatcacccagggacttccacgggttcaagaaatt
tttgaagctcggaatccaaagggtaaatcaaccattagtgaggttaccggagtcgtggaa
ttgattgaagaagatcccgctgaaggggttaaagaaatcacgattcaagggaaagccgat
accagaaagtacaaggtgccattgactgcccggatgcgggttgctgaaggtgacacggtt
cgccgtggagaagccttgaacgaaggttcgattgatccaaaggaattactgaagatcaga
gatactttatccactgaaacctacttgttaacggcggttcaagaagtttaccgacgtcaa
ggggtggaagtgaacgataagcatgccgaaatcatggtgcggcagatgttacggaaggtc
cgggtcatggatccgggtgatactgacattctgcctggaacgttgattgatattgatgat
ttcaaggaacaaaaccgggatgccgtaatgacagggaaggttcctgctacggctcgtcca
gtacttcttggaatcaccaaggccgctttggaaaccaacagtttcttatcagctgcttcc
ttccaagaaacgaccagagtgttgaccgatgctgccattcggggcaaggtcgatccattg
atcggtttgaaggaaaatgtcattatcgggaagttgttaccagccggaacgggtgttcat
gaatatgaagacatcgaaccagaagaactggggcaaactgctgatcaaggagtaactgct
ccttctgatcaaacaaccagcgttgatagtgacgatgccgaatag
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