Fructilactobacillus hinvesii: M3M39_07240
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Entry
M3M39_07240 CDS
T08844
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fhin
Fructilactobacillus hinvesii
Pathway
fhin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fhin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M3M39_07240 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fhin03400
]
M3M39_07240 (mfd)
Enzymes [BR:
fhin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M3M39_07240 (mfd)
DNA repair and recombination proteins [BR:
fhin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M3M39_07240 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
SNF2-rel_dom
Cas3-like_C_2
UB2H
AAA_22
IstB_IS21
PAS_8
CdvA
Motif
Other DBs
NCBI-ProteinID:
USS87875
LinkDB
All DBs
Position
complement(1420187..1423714)
Genome browser
AA seq
1175 aa
AA seq
DB search
MNLTQVFQALPQYQQIQANLTKSKRQLVTGTSGIAQKLLLETIVKDHAKPLLYVTDTLEH
AEQAVKEFSEGVSDIPVYLFPAEELLAAEVATSSPEFRSERVQALHALQVGAPAIVVAST
AGLKRALPQPADFATAQLVVHLGDDFDLTQLQQRLAAMGYSRKNLVAVPGEFAVRGSIVD
IYPLNAENPVRLDFFDTEIDSLRSFDPASQRSIENETTVTVLPATDFLPTTQDREQAVRR
FQKQLQSVQDQALQEHIAALIQDLQTKVTNPEWQIYAHDLFQKETSLLDYLSPDGIVVFD
DYARIRDANQQLEQDEQNWKASVAEQHQLFSDQPVSLNLSTVLGASHQPWLLLSLFQKGL
GRLRLDEIVNVTVRPMQRFFSQMPLLKTEMERYQAALTTVVVVVANEERLTQVQQTFQDF
EIHCNATSIDQLVPNQVQIVTGNLTMGFELPDANLAVITEHELFQRVSERQHPRRVRQQR
FTNAERIKSYTDLKPGDYVVHVNHGIGRYDGMQTMEVDGKHQDYLTITYRNDAHIFIPVT
QLNLIQKYVAAEDQHPSLNKLGGNEWAKTKSKVAKKVDDMADELVNLYAQREQTPGFAFP
EDDDYQLEFEAAFPYQPTPDQIRSTNEIKHDMEQPHPMDRLLVGDVGYGKTEVAMRAAFK
AVEAGKQVAFLVPTTVLAQQHYETLTSRFENFPVAIGVLSRFNSARQTKQTLADLKAGQL
DIVIGTHRLLSNDVQYHDLGLLIVDEEQRFGVKHKEKLKELKKNVDVLTLTATPIPRTLN
MSMMGVRDLSVIETPPANRYPIQTYVMEQNDAAIVDGIRRELQRDGQVFYLHNRVKDIEA
KVDQLQTLLPDARIGYIHGQMTEHQMEQILYDFMNGDYDVLVTTTIIETGVDMPNVNTLF
VEDADRMGLAQLYQIRGRIGRSNRVGQAYFMYQPNKVLTEAGENRLEAIKDFTELGSGFK
VAMRDLSIRGAGNVLGRAQHGFIDSVGYDMYTQMLNNAVAQKQGQQRQSVKTDAQIELGI
EAYLPSRYITDPQQKIELYKRMRQLDSEDQFTELQSDLIDRFGEYPVAVANLLTVDFIKM
VADYALVDQIKRTDHTILITISKQGSQIYRSQDLLRAIATTDFRATVKMVTGRFQLKLII
QPTMQEADWLNELNRLVQALEKAKPAARKGETNEN
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
gtgaatttaactcaagtttttcaagcattaccccaatatcaacaaattcaagcgaactta
acgaagagtaagcgacagttagtaactggtaccagtggcattgcccaaaaattattgtta
gaaacgattgttaaggaccacgctaagccgcttctctacgtgacggatacgttggaacac
gcggaacaagccgtgaaggagtttagtgaaggcgtaagtgacatccccgtttacctgttt
cccgccgaagaattactggcagcggaagttgccactagttccccagaatttcgctccgaa
cgggtgcaggctctgcatgcattgcaagttggagcccccgccatcgtagtggcgtcgacc
gcaggactcaaacgggcattaccacagccagctgattttgcaacggctcaattagtggtt
caccttggagatgattttgatctaacccagttacagcaacgactagcagccatgggctac
agtcggaagaatttggtggctgtgccaggtgaatttgcggtacgaggctcgattgtggat
atttatcccctcaatgcggaaaatcccgtgcgcctcgatttttttgatacagaaattgat
tccctgcgaagttttgaccctgctagtcaacggagcatcgagaatgaaacgacggtgacc
gttttaccggctactgattttttgccgaccacgcaggatcgagaacaagccgttcgtcgc
ttccaaaaacagttgcaatcagtccaagatcaagccttacaggagcacattgccgcttta
atccaggatttgcaaaccaaggtgactaatcctgagtggcaaatttatgctcatgatttg
tttcaaaaggaaacctcattattagactatctttccccagatggaatcgtggtctttgat
gactatgctcggattcgagacgctaatcagcagttagaacaagacgagcagaactggaaa
gcgtcagtagcagagcaacaccagctattttccgaccaaccggttagtttaaacctctcc
acggtgttaggtgctagtcaccaaccgtggcttttgttatcactatttcaaaagggctta
ggccggttacgcttagatgaaatcgtgaacgttacggtgcggccgatgcaacgcttcttt
agtcaaatgcccctgctgaaaacggaaatggagcgctaccaggcggcgttaaccacggtg
gtggtggttgtggctaacgaagagcggctgacccaagtgcaacaaacctttcaggatttt
gaaattcactgtaacgcgaccagcattgaccagttagttcctaatcaggttcagattgta
acggggaacctcaccatggggtttgaactgccagacgctaatctagccgtgatcactgag
cacgaactctttcaacgggtaagtgaacgccagcacccccgtcgggttcggcagcaacgc
tttaccaatgccgaacgcatcaagagttatacggatctaaaaccgggtgattacgtggtc
cacgttaaccacggaattggacgttacgacgggatgcaaacgatggaagtggatggtaag
catcaggattacctgacgattacctatcgcaacgatgcccatatcttcattcccgtcacg
cagttaaatttgattcaaaagtacgtggccgcagaagaccaacaccccagcctcaacaaa
cttgggggcaatgaatgggcaaagaccaagagtaaggttgctaaaaaagttgatgacatg
gcagacgaattggtcaatttgtacgcccaacgagaacagaccccaggctttgcttttcca
gaggatgatgactatcaactcgaatttgaagcggcctttccgtaccaaccaacgccggat
caaattcgaagtacgaatgaaattaaacatgacatggaacaaccccatccgatggatcgc
ttgttagttggggacgttgggtacgggaaaacagaggtagcaatgcgggccgcttttaaa
gcggttgaggccggtaaacaggttgcctttctggtgcccaccaccgtactggcccagcaa
cactatgaaacgttgaccagtcggtttgaaaactttccggtcgcaattggagtgttgtca
cggtttaacagtgcccgccagaccaagcaaacgttagccgatttaaaggccggtcagtta
gacattgtaattggaactcatcggctgctttcaaacgatgtgcagtaccatgatttaggt
ttgttaattgtggacgaagagcaacgttttggagtcaaacacaaggaaaaattgaaggaa
ttgaaaaagaacgtggacgtgttaacactaacggcgactcccattccgcgaaccctcaac
atgtcgatgatgggcgtcagagacttatctgtaattgaaaccccaccagccaaccgctat
cccattcagacctacgtgatggaacaaaatgacgcggccattgtggacggaattcgacga
gaactacaacgcgatggccaggttttttacctgcataatcgggttaaagacattgaggcc
aaggttgatcaactgcaaaccttattgccggatgcccggattggttacattcatggtcag
atgaccgaacaccagatggaacaaattttgtatgacttcatgaacggggactacgacgtg
ctggtgaccaccacgatcattgaaaccggagttgatatgcccaacgttaatacgttgttt
gtggaggatgctgaccgaatgggattggctcagttgtatcaaattcggggccgaattggc
cggagtaaccgagtaggacaggcctactttatgtatcaacccaataaggtactgaccgag
gcaggagaaaaccgcttggaagccattaaggactttactgagttaggatctgggttcaag
gtggccatgcgggatctttcgattcgaggagcagggaacgtcttgggacgcgcccagcat
ggtttcattgattcggttgggtatgacatgtacacgcaaatgttaaacaatgcagtcgcc
caaaagcagggacaacagcggcagtcggttaaaacggatgcccagattgagttggggatc
gaagcgtaccttcctagccgttacattacggatcctcagcaaaagattgaactatacaaa
cggatgcgccaactagacagtgaggaccagtttacggaattacagagtgacttaattgac
cggtttggtgagtatccagtggcagtggccaacctcttgacggtcgattttatcaaaatg
gttgcagactacgctctggtggaccagattaaacgaactgatcacacgattctgatcact
attagtaagcaaggatcacaaatttatcgcagccaggacttgctccgtgccattgccacc
actgattttcgggcgacggtaaaaatggtaacgggacggtttcaactgaaactgatcatc
cagccaaccatgcaagaagcagactggcttaatgaattaaaccgattggtacaagcatta
gaaaaagctaaaccagcagcacgtaaaggagaaacaaatgagaattga
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