Fervidibacillus halotolerans: OE105_03670
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Entry
OE105_03670 CDS
T08855
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fhl
Fervidibacillus halotolerans
Pathway
fhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OE105_03670 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fhl03019
]
OE105_03670 (rnjA)
Messenger RNA biogenesis [BR:
fhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OE105_03670 (rnjA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
DUF4453
DUF5548
Motif
Other DBs
NCBI-ProteinID:
WAA13233
UniProt:
A0A9E8RZD8
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Position
complement(780320..781987)
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AA seq
555 aa
AA seq
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MKIVNNDQTAVFALGGLGEIGKNTYVVQYQDEIIIIDAGIKFPEDELLGIDYVIPDYTYL
VKNADKIKGLFITHGHEDHIGGIPYLLREVNIPIYGGKLALGLIRNKLEEHGLLRSTKLY
EIKEEDVIKFRKTQVSFFRTTHSIPDSYGIVVKTPNGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPEFTMSERKVGESIHDIFRKVDGRIIFATFASNIYRLQQ
VTEAAVKSGRKIAVFGRSMEASIQIGQELGYIKAPKDTFVDGQQINRMPANKVIILCTGS
QGEPMAALSRIANGTHRQIQIMPGDTVVFSSSPIPGNTASINRTINMLYRAGADVIYGSL
NNIHTSGHGGQEEQKLMLRLMNPKYFMPIHGEYRMLITHAKLANDCGIPEENCFIMDNGD
VLALGKKGANISGKVPSGSIYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMREFKI
AAGPDIISRGFVYMRESEDLINEAQLLISKHLTKIMERKTTQWSEIKNEITEILGPFLYE
RTKRKPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattgtaaacaatgatcagactgccgttttcgccctcgggggtttgggggaaatc
ggtaaaaatacgtatgtcgttcaatatcaagacgagattattattatcgatgcggggatt
aaatttcctgaagatgagctactcggaattgattacgtgattcctgattacacctattta
gtaaaaaatgcagataaaattaaaggattgtttatcacccatggtcatgaagaccatatc
ggtggaatcccatatttattacgggaagtaaatatcccgatttacggaggaaaactagcc
ctcggattaataaggaacaagttagaagaacacggtttactccgttcaacgaaactgtat
gaaattaaggaagaggacgttatcaaattccgaaaaacacaggttagtttttttcgaaca
acccacagtataccggactcttatggaatagttgtgaaaacgccaaatgggaatatcgtc
catactggagactttaaattcgattttacccctgttggagaacctgcgaatttaactaaa
atggctgaaattggaaaagaaggggttctttgtttactttccgatagtacaaatagtgag
attcctgaatttacaatgtcggaaaggaaggttggcgaaagtattcacgatattttccgt
aaagtggatggtcgaatcatttttgccacctttgcatcaaatatttatcgattgcaacaa
gtaacggaagcagctgtaaaaagtggcagaaaaatcgctgtattcggtagaagtatggaa
gcatcgatccaaatcggacaagagttaggttatatcaaagctccaaaagatacatttgtc
gacggacaacaaattaaccgaatgccagcaaataaagtcatcatcttatgtactggaagt
caaggagaaccgatggccgctttatctcgaattgctaacggaacccatcgccaaattcaa
ataatgcctggtgatacagtcgtcttctcctcatcgccaattccaggaaatactgcgagc
attaatcgaacgattaacatgttatatcgcgccggtgcagatgtaatctacggttcgctt
aataatattcatacttctggacacggtgggcaagaagaacaaaaattgatgctccgctta
atgaatccgaaatacttcatgccaatccatggagaatatcgaatgctcatcacccatgcg
aagttggcaaatgattgtggaattccggaagaaaattgttttattatggataatggagat
gttttagctttaggaaaaaaaggagcaaacatttctggaaaggtaccgtccggttccatc
tatattgacggaagtggaatcggggatatcggaaatatcgtattacgggatcgtcgcatt
ttatctgaagaaggtcttgtgatcgtcgtcgttagcatcaatatgcgcgaatttaaaatt
gcggcaggaccggatattatttctcgaggattcgtttatatgcgggaatcagaggactta
atcaatgaagcccaactgttaatatccaaacatttaacgaaaataatggaaagaaaaact
actcaatggtcagaaattaaaaatgaaattacagaaatccttggaccgtttttatatgag
cggacgaaaaggaaaccgatgattttgcccatcataatggaagtgtga
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