Fervidibacillus halotolerans: OE105_12450
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Entry
OE105_12450 CDS
T08855
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fhl
Fervidibacillus halotolerans
Pathway
fhl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OE105_12450 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fhl03400
]
OE105_12450 (mfd)
Enzymes [BR:
fhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OE105_12450 (mfd)
DNA repair and recombination proteins [BR:
fhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OE105_12450 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
MFD_D3
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WAA12345
UniProt:
A0A9E8RX24
LinkDB
All DBs
Position
2648065..2651607
Genome browser
AA seq
1180 aa
AA seq
DB search
MEGLYTALMESDDVINVSGGIEEGLKEQLVAGLSGSSRTVFIASLYKKLDRPLVIVTYNL
LQAQKLYDDIIQLLPEDSVYLYPANEVMIADMSIASPELKSQRIETLNFLVQSGKGIMIV
PVAALRKILPPKNLWKRYIFKWKVNEVVDLGELSQQLIRMGYVRSDMVSSPGEFSIRGGI
IDIYPLTETDPLRIELFDDTIESIRSFSVDTQRSKTEKEEVTIGPAAEMIFEKTHYDRIV
KKLEKGLTNSLQIIKDEKVKEELINQTQYELEQLKSGTTPDQIFKYLAFAYDHPASLLDY
VQDQALLLVDEVNRVVEMKESLEKEEAQWKTSLLEEGKIIHDVKLTHDGWNMIVHSRFPV
LYFSLFLRHIPGVSPQNIVNVSSKPMQNFHGQIHVLKTELERWRKSKFTIVFLGADEERI
QKLEKVFDDYDVDVSLNKEGKQLFPEKPQIVKGNLNNGFELPMFKLCVITEGEIFNKRSK
KNVKRNQNISNAERIKSYSELNIGDYVVHVNHGIGKYLGIETLQINGVHKDYLQIKYQGN
DQLYVPIEQIDLVQKYVGTEGKEPKIYKLGGSEWKRVKRKVASSVEDIADDLIKLYAERQ
VSKGFAFSKDTDLQREFEVSFPYQETEDQLRSIEEIKRDMEKPRPMDRLLCGDVGYGKTE
VALRAAFKAIMDGKQVAILVPTTILAQQHYETMRERFQDYPIKIGILNRFRTRKQQQETL
KGLKAGTIDIVVGTHRLLSKDVQFRDLGLLIIDEEQRFGVTHKEKIKQLKSNIDVLTLTA
TPIPRTLHMSLLGVRDLSVIETPPENRFPVQTYVTEYNLSLVKEAVERELARDGQVYYLY
NRVEDIERKAEEINQLIPDARVTYAHGRMNETELENVLLSFLNGEYDVLVSTTIIETGID
IPNVNTLIVENADRMGLSQLYQLRGRVGRSNRVAYAYFTYKRDKVLTEVAEKRLQTIKEF
TELGSGFKIAMRDLSIRGTGNILGAQQHGFIESVGFEMYSQMLKEAIEKRKGEVQKDDSL
SVEIDIGLDAYIPDEYISDGYQKIEMYKRVRGIEQIEDITELQKEMIDRFGKYPKEVDRL
FSIAKLRVWAGSVNVESIKRTKDGYEILFKEQVSSNMHVEKFVEHFHEFGRMIGYGMDDK
KFKMVIYSRRETEEKVFSVLMTVMEQIPNLLSPQKVKSVS
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtttatataccgctttaatggaaagtgatgatgtaattaatgtatctggcggt
atagaggaaggattaaaggaacaactggttgctggactttccggctcgtccagaaccgtt
tttatcgcttccttgtataaaaaattggaccgcccactcgtaatcgttacgtataattta
ttgcaagcccaaaaattatatgatgatatcattcaattactaccggaggattcggtatac
ttatacccagcaaatgaagtgatgattgccgatatgagtattgccagtcctgaattgaaa
tcccaacgaattgagacattaaattttttagtccagagtggtaaagggattatgatcgta
ccggttgctgctttacgaaaaatacttcccccgaaaaacctttggaaaagatatattttc
aaatggaaagtaaatgaagtggttgatttgggggagttgtcccaacaactcattcggatg
ggatatgtccgttcagacatggtttcatcccccggtgaatttagcattcgcggaggaata
atcgatatttatccgctaacggaaacggatccgttacgaattgaacttttcgatgatacg
atcgagtcaattcgttccttttctgtagacactcagcgttcaaagacggaaaaggaagag
gttacaatcggtccagctgctgaaatgattttcgaaaaaacccactacgatcgtatcgta
aaaaaattggaaaagggtttaacgaatagtttacaaatcatcaaggatgaaaaagtaaag
gaagaactgattaatcaaacacagtacgagttagaacagttaaaatcagggacaactcct
gaccaaatttttaaatatctagcattcgcatatgatcatccggccagtttactagattat
gttcaagatcaggccctattattggtcgatgaagtgaatcgggttgttgagatgaaagaa
tcccttgaaaaagaagaagcacaatggaaaacgagtttattagaagagggaaaaatcatt
cacgatgtgaagctcacccatgatggctggaacatgatcgttcattcccgatttcccgtc
ctttatttctccttatttttaagacatatacctggggtttctcctcaaaatatcgtcaat
gtttctagtaaaccgatgcaaaatttccatggccaaattcatgtgttgaaaacagaactg
gaaagatggagaaaaagtaagtttaccatcgtttttttaggcgcagacgaagagcgaatt
caaaaactagaaaaagttttcgatgattacgatgtggacgtttctttaaataaggaaggg
aaacaactttttccggaaaaaccgcaaattgtgaaaggaaatttaaataacggttttgaa
ctcccgatgttcaaactttgtgttattacggaaggagaaatttttaacaaacgatcgaaa
aaaaatgtaaaaagaaatcaaaatatctccaatgcggaacgaattaaaagttattctgaa
ttaaacattggtgattatgtcgttcatgtcaaccatggaatcggtaagtatttaggaatt
gaaactttacaaatcaacggtgttcataaagattatttgcaaattaaatatcagggaaat
gatcaattatatgttccgattgagcaaattgatttagttcaaaaatatgttggaacggaa
ggtaaagaaccaaaaatttacaagcttggcggaagtgaatggaaacgggtcaaacggaag
gtagcatcctccgttgaagatatcgccgatgatttaatcaagttatatgcggaacggcaa
gtatcaaagggatttgcattttcaaaagatacggatttacaacgggagtttgaagtgagc
tttccttaccaagaaacagaggatcaactccgttcgattgaagaaattaagagagatatg
gaaaagccgcgaccgatggaccgtctcctttgtggtgacgtaggttacggaaagacggaa
gtggcattacgggcagctttcaaagcaataatggacggcaaacaggtggccattttagtt
ccaacgacaattttagctcaacaacattatgaaacgatgcgggaacgatttcaagattat
ccgattaaaatcggtattttaaaccgttttcggacgcgaaaacaacagcaggaaacgttg
aaaggtttaaaggctggaacgatcgatatcgtcgtcggaacccatcggttgttatcgaag
gatgtacagtttcgagatttaggattgttgatcattgacgaagaacaacggttcggtgta
acccataaggaaaaaattaaacaattaaaatccaatattgatgtccttacattaacagct
acaccgattccaagaacattgcacatgtctttattaggtgttcgggacttatcggtaatc
gaaacacctccggaaaatcggttccctgtacaaacgtatgtgacagaatacaacctttcc
ctcgtgaaagaagcggtggaacgggaactggcaagagatgggcaagtgtactatttgtat
aatcgagtggaagatatcgaaaggaaggcagaagaaatcaatcagcttattcctgatgct
cgagttacttatgcccacggaagaatgaatgaaacggaattggaaaacgtgttactttcc
tttttaaatggggaatacgatgttttagttagtacgacgattattgaaacagggatcgac
attccgaatgtaaatacgttaatcgtggaaaatgcagatcgaatggggctatcccaactt
tatcagctccggggtcgtgtagggagatccaatcgggttgcttacgcctatttcacttac
aaacgggataaagtattgacggaagttgcagaaaaacgtttgcaaacgattaaagagttt
acggaattaggttccggatttaaaattgcgatgcgggatttatcaatacgaggtacggga
aacattttaggcgcccagcaacacggatttattgaatcggtcggttttgaaatgtattca
caaatgttgaaggaagcgattgaaaaaagaaagggagaggttcaaaaggacgattcccta
tcggtcgaaatcgatatcggattggatgcgtatattcccgatgaatatatttcggatggt
taccaaaaaattgaaatgtataaacgggttcgtgggatcgaacagatcgaagatattaca
gagcttcaaaaggagatgattgatcgctttgggaagtatccgaaagaagtcgatcggcta
ttttcaattgcaaaattgagagtttgggcgggatctgtaaatgtggagtcgatcaaacgg
acgaaagatgggtacgaaattcttttcaaggaacaagtttcttcaaacatgcatgtcgaa
aagtttgtggaacatttccacgaattcggccgtatgatcggttatggcatggatgacaaa
aaatttaaaatggtcatctattccagaagggaaacggaggaaaaagttttttccgtatta
atgacagttatggaacaaatcccaaaccttttatcaccacaaaaagttaaatcggtatca
taa
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